G55570


Basic Information

Item Value
gene id G55570
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000009
NCBI id null
chromosome length 16003125
location 8354372 ~ 8392143 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU63206
TTTTTTTTTTTTTTTTTTTTTTTTGAAGGTTTAAGTTCTTTATTTGCAGTGCAGTTTGTTTAAATTATTGTCTTGTTTGTGCATATTTTTAGAGAAAATATCACCAGAATTAACAAGACACAATTTTGTAAACATTACAGCTAAACATTTCACAGCAAAAACAACAGAAAATAAATTCATTATAAGGCACATACATTTTCCATAATTAAAGCCCTTTAAAATTTTGATGATTCAGTAAGAAACATTATGGGAACTACAGTTCTATTTAAAAATCTTCTCCCTGATTGTATCTGATGTGATCAAGTCCTCAGTCTCACTGTGTAAAATGATTAAGTGACTAAGTGAAAGTGATTAAATATTCAGGATAAGCATTATCATCACGAAATACCACAAAAATGGTTGGAGCATTAGGGTTGTCCACAACAGTGTCGTACAGGTCACAGTTGGCATTTTTTGCAGGTGGCACAATCATCCCTCCTACTCCTCTAGTGTAGTCTCCCGTAAGGACTCTGCAGAGGTACATGTGCTTATGTCTCTGAGCATTAGGCACTGAGTATGTGTCGCTAGAAGAGTAGCTTGCATTAAGTGCAAAGTAAGTGCCGTTTCCATATGCTGCAGCCATTTTTTCCTGCATAGCTGCGATTAAATCCACTCTTATTGATGTGACTGATAGTCTGCTCACTGGTTCCATGAAATAGTCTTTTCTCATTGTTTTGATGACCGTTCTTTTTCTCCATGACGCTTTTGTTATTCTGGTAGTTCTTCCACATGCCAGGATTCTGGATTCGTTCAATCTATAATAAAAAACCAGGTGTAAAAACCAGATAAGAATCCCATAATGAATATGAGTATGAAATGGAGTTGTTGGTGATGTTGCCATGTGTTTATTTCCTTGTGATTTACAATGTATAGCACTACCTAGTTAAAAAATTACATCCACCTACACACATCCTAAGAATTCTATATATAACTGGGGTTTAAATCCTGTAAATAAGTATGAACTGTTCAGAAAACACTAAAAACAATATTTTAGGAGGGAAAGGCATTAGTATGTTCAACCCTGTGTAGACCATCGGATATGAAGAAAAAAAAAACAATATAATAAAATGACACACACCTTCAAGACATTGTTTTTTGGACAAGTGGCCTGGAAGAGCCTCAATACTTCTTTGTATTCTGTGCTGGTCGTTTGCAAATTAAACCTTTGGTACAACTGGTCAGGCGCCATGGCATCCCAATACTGTGGGATACTTTCAATTGCTGAAGAAAAACATAGTTTTTTTTTTAAAATGGTAGTGAAATTAGTTCTAGTGCAATTAGACAAATCATATCCAATTTGCATCTTTTATTTATTATGATAAGACAATTTATACATTTATTCACTTTATATTTATATATGTATTATTTTCTTTTTCGTATCGATATGATATTACACAGCAAATACCTTTCAGTTTGTCAATGCGTTTGATGTCCATCTGGTTTCCACTAGTAGTGCTCACCGCAGGACCCTCAGGCAGTTTGACCTGGTACGTTTGGCCTTGGAAGGAAATTCTGATGTCTGGAGCTTGCCTGCTAAGGGCCTTTTCCAACTCAAAATTTGTAAGTTGATCAAAACTCTTATATTGCCCACCTTGTTCATACTGCCAATCCACAAGCTCACTTGTGTAATCCAGGTCTTTTTTTAGTATTTCATTTTCTTTGGCTGTTTTGAGCATTTCTTGGATTTCCTGAATGGCTTTTAGAACATCTCGGCTGAGACCTTGTACTATGAGTGTGGCCTGTCCTGAGGTCCCTTCTAAACCTTTATGGGCTTTGTACTCTAGCCTTATAGTCACATCTATACTGCTTTGCAGGTCCTGGATTCGCTGTTGGTCCTTATCTGTTAAGCTAAGGATCGCTGTGTCTGTGATGGACTCGAACACTTGTTCCTGAGAGATCGTATCCTCTAAGAAACGCTTTGTTTTGTCCACTTCTGCTTGTGATGGTCCACAGATAGAAAAAAGCACTGGATGTACTTGCACGCCTTCAATGACAAAGTCTTTGCCACCATGTTGTTTTATTTCTTTCTCCCAAGATCCACTGAAGAATGATTTTGCATATGCTACAACATACACAATGTTGGAATAGAGAAATATCTTCAGTCAGGTCGTGTTTGACATGTTTGAATATTTTAATGTTTTAAAAGCTACTGAGAAAATTACATGTTCTATGAAATTAGGTTGAAGTGTAAGTAATGAGATTCATACTTTTGATTTTTGACCATGTACTCTCTTTCTCTTGTTTGGGAGGCCCAGTTTCTCTATACTGCATACTTTTGAGGAATTCAGGAAGCATGGGGGCCTGGAACACAACCAATCTGATCAGCTTGATAGTGGACTGGGGAGTTTTTCTTACCATGTCCAACACACCATCCATCATGGAGTCTGCTACTTGACCTGGAGACAAACCCG
>TU63207
TTTTTTTTTTTTTTTTTTTTTTTTTGAAGGTTTAAGTTCTTTATTTGCAGTGCAGTTTGTTTAAATTATTGTCTTGTTTGTGCATATTTTTAGAGAAAATATCACCAGAATTAACAAGACACAATTTTGTAAACATTACAGCTAAACATTTCACAGCAAAAACAACAGAAAATAAATTCATTATAAGGCACATACATTTTCCATAATTAAAGCCCTTTAAAATTTTGATGATTCAGTAAGAAACATTATGGGAACTACAGTTCTATTTAAAAATCTTCTCCCTGATTGTATCTGATGTGATCAAGTCCTCAGTCTCACTGTGTAAAATGATTAAGTGACTAAGTGAAAGTGATTAAATATTCAGGATAAGCATTATCATCACGAAATACCACAAAAATGGTTGGAGCATTAGGGTTGTCCACAACAGTGTCGTACAGGTCACAGTTGGCATTTTTTGCAGGTGGCACAATCATCCCTCCTACTCCTCTAGTGTAGTCTCCCGTAAGGACTCTGCAGAGGTACATGTGCTTATGTCTCTGAGCATTAGGCACTGAGTATGTGTCGCTAGAAGAGTAGCTTGCATTAAGTGCAAAGTAAGTGCCGTTTCCATATGCTGCAGCCATTTTTTCCTGCATAGCTGCGATTAAATCCACTCTTATTGATGTGACTGATAGTCTGCTCACTGGTTCCATGAAATAGTCTTTTCTCATTGTTTTGATGACCGTTCTTTTTCTCCATGACGCTTTTGTTATTCTGGTAGTTCTTCCACATGCCAGGATTCTGGATTCGTTCAATCTATAATAAAAAACCAGGTGTAAAAACCAGATAAGAATCCCATAATGAATATGAGTATGAAATGGAGTTGTTGGTGATGTTGCCATGTGTTTATTTCCTTGTGATTTACAATGTATAGCACTACCTAGTTAAAAAATTACATCCACCTACACACATCCTAAGAATTCTATATATAACTGGGGTTTAAATCCTGTAAATAAGTATGAACTGTTCAGAAAACACTAAAAACAATATTTTAGGAGGGAAAGGCATTAGTATGTTCAACCCTGTGTAGACCATCGGATATGAAGAAAAAAAAAACAATATAATAAAATGACACACACCTTCAAGACATTGTTTTTTGGACAAGTGGCCTGGAAGAGCCTCAATACTTCTTTGTATTCTGTGCTGGTCGTTTGCAAATTAAACCTTTGGTACAACTGGTCAGGCGCCATGGCATCCCAATACTGTGGGATACTTTCAATTGCTGAAGAAAAACATAGTTTTTTTTTTAAAATGGTAGTGAAATTAGTTCTAGTGCAATTAGACAAATCATATCCAATTTGCATCTTTTATTTATTATGATAAGACAATTTATACATTTATTCACTTTATATTTATATATGTATTATTTTCTTTTTCGTATCGATATGATATTACACAGCAAATACCTTTCAGTTTGTCAATGCGTTTGATGTCCATCTGGTTTCCACTAGTAGTGCTCACCGCAGGACCCTCAGGCAGTTTGACCTGGTACGTTTGGCCTTGGAAGGAAATTCTGATGTCTGGAGCTTGCCTGCTAAGGGCCTTTTCCAACTCAAAATTTGTAAGTTGATCAAAACTCTTATATTGCCCACCTTGTTCATACTGCCAATCCACAAGCTCACTTGTGTAATCCAGGTCTTTTTTTAGTATTTCATTTTCTTTGGCTGTTTTGAGCATTTCTTGGATTTCCTGAATGGCTTTTAGAACATCTCGGCTGAGACCTTGTACTATGAGTGTGGCCTGTCCTGAGGTCCCTTCTAAACCTTTATGGGCTTTGTACTCTAGCCTTATAGTCACATCTATACTGCTTTGCAGGTCCTGGATTCGCTGTTGGTCCTTATCTGTTAAGCTAAGGATCGCTGTGTCTGTGATGGACTCGAACACTTGTTCCTGAGAGATCGTATCCTCTAAGAAACGCTTTGTTTTGTCCACTTCTGCTTGTGATGGTCCACAGATAGAAAAAAGCACTGGATGTACTTGCACGCCTTCAATGACAAAGTCTTTGCCACCATGTTGTTTTATTTCTTTCTCCCAAGATCCACTGAAGAATGATTTTGCATATGCTACAACATACACAATGTTGGAATAGAGAAATATCTTCAGTCAGGTCGTGTTTGACATGTTTGAATATTTTAATGTTTTAAAAGCTACTGAGAAAATTACATGTTCTATGAAATTAGGTTGAAGTGTAAGTAATGAGATTCATACTTTTGATTTTTGACCATGTACTCTCTTTCTCTTGTTTGGGAGGCCCAGTTTCTCTATACTGCATACTTTTGAGGAATTCAGGAAGCATGGGGGCCTGGAACACAACCAATCTGATCAGCTTGATAGTGGACTGGGGAGTTTTTCTTACCATGTCCAACACACCATCCATCATGGAGTCTGCTACTTGACCTGGAGACAAACCCG

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU63206 False 2450 lncRNA 0.37 3 8354372 8392143
TU63207 True 2451 lncRNA 0.37 3 8354372 8392143

Neighbor

gene id symbol gene type direction distance location
CI01000009_08331108_08335275 SERPINE3 coding upstream 18893 8330781 ~ 8335479 (+)
CI01000009_08317456_08323603 FAM124A coding upstream 30201 8317456 ~ 8324171 (+)
CI01000009_08303379_08307552 NA coding upstream 46802 8303314 ~ 8307570 (+)
CI01000009_08232128_08270301 COL6A3 coding upstream 83839 8231800 ~ 8270533 (+)
CI01000009_08203196_08206596 RPE, RPE.S coding upstream 147488 8201995 ~ 8206884 (+)
CI01000009_08404846_08408838 NA coding downstream 11179 8403322 ~ 8409335 (+)
CI01000009_08412100_08415817 NA coding downstream 19957 8412100 ~ 8415916 (+)
CI01000009_08425414_08428737 NDUFA10 coding downstream 33141 8425284 ~ 8428737 (+)
CI01000009_08538228_08542208 NA coding downstream 145152 8537295 ~ 8542225 (+)
CI01000009_08632210_08646938 SH3BP4 coding downstream 239913 8632056 ~ 8647074 (+)
G55571 NA non-coding upstream 227084 8123430 ~ 8127288 (+)
G55572 NA non-coding upstream 236404 8115686 ~ 8117968 (+)
G55608 NA non-coding upstream 262162 8087786 ~ 8092210 (+)
G55606 NA non-coding upstream 268106 8083395 ~ 8086266 (+)
G55564 NA non-coding upstream 283821 8068382 ~ 8070551 (+)
G55657 NA non-coding downstream 39772 8431915 ~ 8432235 (+)
G55672 NA non-coding downstream 42280 8434423 ~ 8434648 (+)
G55676 NA non-coding downstream 47530 8439673 ~ 8439971 (+)
G55677 NA non-coding downstream 48470 8440613 ~ 8440820 (+)
G55679 NA non-coding downstream 69308 8461451 ~ 8465708 (+)
G53651 NA other upstream 2105980 6245564 ~ 6248392 (+)
CI01000009_05931829_05943829 KCNH3 other upstream 2421571 5931718 ~ 5943899 (+)
G53388 NA other upstream 2815318 5522242 ~ 5540638 (+)
CI01000009_03202999_03207060 MPC2, MPC2.S other upstream 5145388 3202207 ~ 3208984 (+)
G51529 NA other upstream 5291785 3062033 ~ 3062587 (+)
G56100 NA other downstream 737157 9129300 ~ 9130286 (+)
CI01000009_09853929_09854476 SAP18 other downstream 1461216 9853929 ~ 9856587 (+)
CI01000009_11761868_11765848 ORMDL1.S, ORMDL1 other downstream 3368643 11761606 ~ 11766944 (+)
G57811 NA other downstream 3541799 11933942 ~ 11935251 (+)
CI01000009_12432736_12435509 NA other downstream 4040415 12432538 ~ 12436017 (+)

Expression


Co-expression Network