G55608


Basic Information

Item Value
gene id G55608
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000009
NCBI id null
chromosome length 16003125
location 8087786 ~ 8092210 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU63258
CAGTTTTCGACTGCTTTCTGAAGCTTGTTGTCCTTCACCTTGACCATCGACCGAGGCTCTGGGGTTCTTGACTGTGATGCAGGGTGTTGTGGCTCTCAGCGCACCACTGACTCCATGGTAGTATTTAAAACAGATCCTTGTCTCAGCTTCAAGGAAGTATGGCCCTGCCTCCAGCCTCCAGACAATCTGCCCACACTGTGTACCATTAACCCCACGGTTCTTGCAGTCCCACATGTTTGATGGACAGGTCTCATCTATGTGGTACAGGCCAATCCAGTCTGTGGCATCCACCTCTTCCTTGATATCCCATGAGATGACCAAGTTCTGGCCCCGGCACATCGTGAACTCTAAAGTAGAAGCTGTGAGTGAGGATCGCCCTTGAGAACTGACCAGGTCTGTATCACTGTTGGCTCTGAGGAGTCCAACTCCAGCCTGCTCGGCCCCACCACGCTCGGCTAAGCTCCGAAGATTGTCTGGGCTGAGTGTGTGCCGCACATTTGGGCTCCGTCTACGACCTGCAGACTCCCGTGTGGCCAGGTGATCCCGCCCCTGAGGCGCCATGCCTGACGCCGGGTTGGAGCGGGGCCTGGACGGGAGAACTGCTGTGGCGAGAGAGGGGCGAATGGTGGCAACTGTGTGGAAGCACGTCTACGGACTGGATGGGTTTGAATGGGGGTTTGAGGAAAAGGCCGGAATGATCGAGAACCCTGACCTGAATCCTGGATCGGACCTGGACTGAACTGTAATTGTCTGGACATATAGGTGAAGGACCAGATAGGAACTCTTTTGGCCTGTCCTCTGTTAGAGCACTTGGCTATGATAATGGCTATTGACCTTAAAGATTTGAGAATAAGGTACTTAATTAAACTTTAATGAATCTAAAAGAGCTCAGTTATTTCCATTGATTGGCCAATGGGTTCCAGCTAGCAAACACAATCCTCCTCGGCTCCTAATAGTTTATCATCAATACCATCTGTCTATAAACACACAATGAAGAAGATGAAACTAATTTTAGAGTTTTTAGAACCTAAGAAATAAGTGTGAGGAATAGGGAAAAATAATGGGAAATGGTAAGGAAAATGACAAAGAGATAGAGAAAGGAACAAAGAAGGAGAAAGGTCAGTAAAGAGAAAGTATTTACAGTACTACACAATTTCATATGCACAATCATTAATACCACAGATGTAAGTTTCGTGAGCCTTAAGT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU63258 True 1206 lncRNA 0.48 4 8087786 8092210

Neighbor

gene id symbol gene type direction distance location
CI01000009_08054672_08056508 NA coding upstream 30011 8054200 ~ 8057775 (+)
CI01000009_08045921_08048630 NABP1A coding upstream 38632 8045519 ~ 8049154 (+)
CI01000009_08027345_08040961 NA coding upstream 46802 8025926 ~ 8040984 (+)
CI01000009_08002011_08021062 TMEFF2 coding upstream 66673 8001776 ~ 8021113 (+)
CI01000009_07982462_07999759 NA coding upstream 87480 7982250 ~ 8000306 (+)
CI01000009_08118552_08120567 TYW5 coding downstream 26237 8118447 ~ 8120705 (+)
CI01000009_08170088_08177304 COL6A3 coding downstream 77878 8170088 ~ 8177369 (+)
CI01000009_08186704_08193700 ACKR3A coding downstream 93660 8185870 ~ 8194217 (+)
CI01000009_08203196_08206596 RPE, RPE.S coding downstream 109785 8201995 ~ 8206884 (+)
CI01000009_08232128_08270301 COL6A3 coding downstream 139590 8231800 ~ 8270533 (+)
G55606 NA non-coding upstream 1520 8083395 ~ 8086266 (+)
G55564 NA non-coding upstream 17235 8068382 ~ 8070551 (+)
G55557 NA non-coding upstream 137776 7949711 ~ 7950010 (+)
G55513 NA non-coding upstream 178423 7909050 ~ 7909363 (+)
G55476 NA non-coding upstream 194741 7892846 ~ 7893045 (+)
G55572 NA non-coding downstream 23476 8115686 ~ 8117968 (+)
G55571 NA non-coding downstream 31220 8123430 ~ 8127288 (+)
G55594 NA non-coding downstream 215133 8307343 ~ 8363335 (+)
G55570 NA non-coding downstream 262162 8354372 ~ 8392143 (+)
G55657 NA non-coding downstream 339705 8431915 ~ 8432235 (+)
G53651 NA other upstream 1839394 6245564 ~ 6248392 (+)
CI01000009_05931829_05943829 KCNH3 other upstream 2154985 5931718 ~ 5943899 (+)
G53388 NA other upstream 2548732 5522242 ~ 5540638 (+)
CI01000009_03202999_03207060 MPC2, MPC2.S other upstream 4878802 3202207 ~ 3208984 (+)
G51529 NA other upstream 5025199 3062033 ~ 3062587 (+)
G56100 NA other downstream 1037090 9129300 ~ 9130286 (+)
CI01000009_09853929_09854476 SAP18 other downstream 1761149 9853929 ~ 9856587 (+)
CI01000009_11761868_11765848 ORMDL1.S, ORMDL1 other downstream 3668576 11761606 ~ 11766944 (+)
G57811 NA other downstream 3841732 11933942 ~ 11935251 (+)
CI01000009_12432736_12435509 NA other downstream 4340348 12432538 ~ 12436017 (+)

Expression


Co-expression Network