CI01000009_08186704_08193700 (ACKR3A)


Basic Information

Item Value
gene id CI01000009_08186704_08193700
gene name ACKR3A
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000009
NCBI id null
chromosome length 16003125
location 8185870 ~ 8194217 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000009_08186704_08193700.mRNA
ATATAAAAGACTGAATACACAAAGGATGAAAATAAAAGGGTCTTCAGAGATTTTTTTAGGTGTCCCTAATATTTCTGAAAAACAAATACAAAGACAGAAACAGAGAAATAAGAGTCCATTTCTGTTATGTTTCACTTACCTTTCATCTGACACTTAAAGAAAGAGAACACTTATATAAACCATTTCCAAGTAAGTTCATGGGAAGAACTTACATATTTGCGTATAAGTTATCTGCTGGGCAGCAACGAGTTGTTCAGAGAGACGATGTGATCTCCAATGGCCTTGACCCTTAAGCAGAAGAGGGCATGACCCAAGTGACACCTATGGACAAGTTTATCCAGAGCAGTTCAACCTTCAGCTGTCACCAGCAGTCTTTCATGTTTATTGAGACATCTGTGGGAACAAGATTAAAACAGGAAGCTTTAATCCAGTCACAATGTTGCGCTGTACCAATTGACAAAATGATGCTGTTTTCTTAAACATTAACTAAATGAAACAAATTAATCCTCCACTGCAGGAAGTTATTTAAAGGTCCTTTGTTCTCAAGCACAGAGTCACTCATTTTACCACAGTTGTTGCTTAGCAATGAAGGTTAAAGTGTGTTTGAAAAGTAGAGAGAGATTTTTTTTTTTCCCTTTTTGCTCTGTTCCAGCAGCTTTGGACCCCTGCTCTCTTCCCTCCTTAATTCACATCATTCAATCTCTGTTTCAAAGCCTCCACCAAAAAAAGGAGCCAAAAGGTCTCTCCCCTCCTCTGTATTTAGAAGAAAGCTCAGATAAAGAAGCTGGCACAAGTGCTAGGGAGAACCAAGATGCTTATCAGTGACTTTTTGAAATGTGCGCTCTGATACTTTTGATAGCTGGGGACAATGGATATCCGTGCATGCTGAGGCTGCCCTTTCATGCAGAACGAGCAAAAGACTGTAGACGAGTTTTAGTAGGCTGTATTCATTTCACTACTGCCTGCTTCATACACCTGCACTACACTAGACGATTTGATAAAAGCTCCGCAAAGTTGCAGTCTTCAAATGAACTGACTGAATTCTTCGCCATGTGGGAAGAATTAAACTTCACAGACGCCAGTGACAACAGCTCACGGGTGGAAGTGCAAATGTGCCCCACCTCCTTCAACCGTACTGCTCTCCTCAATGCTATGTGCACCCTCTATGCCTTTATTTTTGTTGTAGGCCTGGCCGCCAATGCGCTAGTAGTGTGGGTCAACTTGCGCTCGGAGCGTCATTACCACGAGACACATTTGTATATATTAAACCTAGCGGTGGCTGACTTGTGTATGGTCGCTACTCTCCCAGTGTGGGTGAGCTCGCTGGCACAGGGTGGTCACTGGCCGTTTGGCCAGGCGGCTTGTAAGCTCACACATCTTCTCTTCAGCATCAACCTTTTCGCAAGCATCTTCTTCCTGGCCTGCATGAGCGTGGACCGTTATCTTTCGGTGGTACGCTCGGAGGAGATTTCTCCCAGACGAGGACGACAAATACGCCGTTTAGTGTGTGCAGTAACATGGCTGCTTGCTTTATTCGCCTCAGTACCTGACACATACTTCCTGCAGTCCGTAAAGTCACTACACAGTCATGTGACCTTGTGTCATCCTGTATATCCAGAGGACAACCCTTTGCAGTGGATGGTGGGCATTCAACTGAGTTTTGTGGTTCTTGGTTTTGTCATTCCCTTCCCCATTATAGCAGTGTCCTATGCACTGTTGGCAAAAGCTCTGGCTTCATCTTCCTCTCATTCCCCTTTAAATGGTGACCAGGATCGCAGCGTGAGCAGGAAGGTCATCCTCACGTACATAGTGGTTTTCATAGCTTGCTGGGCACCATATCATGCTGTGCTGTTAGCCGACGCTCTAGCCATGCTAGGTGTGCTCCCACTGGGCTGTGGTTCAGAGAACGGCCTTTTTGTGGTGCTGCACCTCACGCAGTGCCTGTCGCTGCTGCACTGCTGCGTGAACCCTGTTGTCTACAGCTTCGCTCACCGTCACTACCGCTATGACCTCATGAAAGCCTTCATCTTCAAATATTCCACGCGTACGGGGCTTGCACAACTCATGGAGGGCTCTCAGGGCACCGAGACAGAATACGCAATTGTGGAGAACAACCCTATGGCTGTGAGTTAGGACCCTCGAGACGTCACACTAAACCAAAGTTCTGCACTGCTTCAAAACAGGAACTCCTCTGACATGTTTTCCTGAAGTTCAGATAAACAAAACTGAATTTGAACATGTTATACATCAAAATAGCAGAAAATTCTGAACAGTGACCCCAAAGATACTGAATAATTCATTTGAAATGTGCCAAGACTGGTGAGATCAGAAACACTCTGACATGTTTTCCTAAATTCAGATAAAACTGAATCTGAACATGTCAAAATTGCAGAAAGTGCTCAACAGTGACCCCAAAGATAGTGAATAAGTCATTTGAAATGTACCAAAAACTGATGGGATTTTATTGTAAAATGAGAACCATAAACATTCAACCAATGAATTGATTCCAAACTGACTAGCAGCCAAAATTGTACCATTTTAAACCACTTTAGAGAAACATGTATGTTACAGCTTGGTGCTGTATCATTCAAAAAACAAAATCTCCTATAATTGTGTCAAATCACTTCTTAGAAATGTGTGATTGCTTTCA

Function

symbol description
ackr3a Predicted to enable G protein-coupled receptor activity; chemokine binding activity; and coreceptor activity. Acts upstream of or within chemotaxis and posterior lateral line neuromast primordium migration. Predicted to be located in membrane. Predicted to be integral component of membrane. Is expressed in several structures, including midbrain hindbrain boundary neural rod; midbrain neural rod; midbrain neural tube; presumptive endoderm; and rhombomere. Orthologous to human ACKR3 (atypical chemokine receptor 3).

GO:

id name namespace
GO:0001570 vasculogenesis biological_process

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000009_08186704_08193700.mRNA True 2650 mRNA 0.44 3 8185870 8194217

Neighbor

gene id symbol gene type direction distance location
CI01000009_08170088_08177304 COL6A3 coding upstream 8501 8170088 ~ 8177369 (+)
CI01000009_08118552_08120567 TYW5 coding upstream 65165 8118447 ~ 8120705 (+)
CI01000009_08054672_08056508 NA coding upstream 128095 8054200 ~ 8057775 (+)
CI01000009_08045921_08048630 NABP1A coding upstream 136716 8045519 ~ 8049154 (+)
CI01000009_08027345_08040961 NA coding upstream 144886 8025926 ~ 8040984 (+)
CI01000009_08203196_08206596 RPE, RPE.S coding downstream 7778 8201995 ~ 8206884 (+)
CI01000009_08232128_08270301 COL6A3 coding downstream 37583 8231800 ~ 8270533 (+)
CI01000009_08303379_08307552 NA coding downstream 109097 8303314 ~ 8307570 (+)
CI01000009_08317456_08323603 FAM124A coding downstream 123239 8317456 ~ 8324171 (+)
CI01000009_08331108_08335275 SERPINE3 coding downstream 136564 8330781 ~ 8335479 (+)
G55571 NA non-coding upstream 58582 8123430 ~ 8127288 (+)
G55572 NA non-coding upstream 67902 8115686 ~ 8117968 (+)
G55608 NA non-coding upstream 93660 8087786 ~ 8092210 (+)
G55606 NA non-coding upstream 99604 8083395 ~ 8086266 (+)
G55564 NA non-coding upstream 115319 8068382 ~ 8070551 (+)
G55594 NA non-coding downstream 113126 8307343 ~ 8363335 (+)
G55570 NA non-coding downstream 160155 8354372 ~ 8392143 (+)
G55657 NA non-coding downstream 237698 8431915 ~ 8432235 (+)
G55672 NA non-coding downstream 240206 8434423 ~ 8434648 (+)
G55676 NA non-coding downstream 245456 8439673 ~ 8439971 (+)
G53651 NA other upstream 1937478 6245564 ~ 6248392 (+)
CI01000009_05931829_05943829 KCNH3 other upstream 2253069 5931718 ~ 5943899 (+)
G53388 NA other upstream 2646816 5522242 ~ 5540638 (+)
CI01000009_03202999_03207060 MPC2, MPC2.S other upstream 4976886 3202207 ~ 3208984 (+)
G51529 NA other upstream 5123283 3062033 ~ 3062587 (+)
G56100 NA other downstream 935083 9129300 ~ 9130286 (+)
CI01000009_09853929_09854476 SAP18 other downstream 1659142 9853929 ~ 9856587 (+)
CI01000009_11761868_11765848 ORMDL1.S, ORMDL1 other downstream 3566569 11761606 ~ 11766944 (+)
G57811 NA other downstream 3739725 11933942 ~ 11935251 (+)
CI01000009_12432736_12435509 NA other downstream 4238341 12432538 ~ 12436017 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_037828 ackr3a coding NC_007120.7 CM002893.2 24043780 ~ 24050257 (-)