CI01000009_08054672_08056508


Basic Information

Item Value
gene id CI01000009_08054672_08056508
gene name NA
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000009
NCBI id null
chromosome length 16003125
location 8054200 ~ 8057775 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000009_08054672_08056508.mRNA
GTTTAAAAAGAAACTTAAATTTTGGACATTAGATTAAAAAAGGTTCTGCCACATTAATCACTACAGTGTTCTATTCATGCAGTCAATCCAAATGCGTCATATATCAGCACTGCCGCTGTTCACGAATGCGTTTTGACTTCGCGCATGCGCATCGTTGCCAAGTTTTGACGCTCCCCTGAAGTGCCACTTGGCGGCGTTTAATATAAACAAATCATAAGCTATACATATTTCACTATCCTAAACCGTTTTGTTCATTTTAAGCGTTAAAATTATTAACCGAATGCCCACCGGATTATCCTGAACGCAGGATAATAGTTTGGATCATGCGGCGTTACTTTTTGCGATTGTTTTGCAGTGATGTTTTCGATCTTAATGCTGCAGGTCGTGCAGTCGCAGCTACATAATCCTTTTGCTTATGGGAAGCATCCGATCGGTTGTGGCTTGTTTATCGCTAGCCGCTATAGCGAGGAAAATGACCGCCGCGGCGGGGATGTGCGTACCCGGGACATCAGCTGCTGTGCCCGGGCTGCTCCGCCTGACTTCAGTACCCGGTTATGATCAAAACCGCGTAAATGATGTTCTGCTCTTAAGACCCGCCACGGAAACGCAGAGACGATGCGACAGCGAAACAGAGAACCTGCAGAATGGAAACAATCACGTAGTCTTCTTTCCTGGAGACATTCAGAACTTTCAGCAGGAAATGGCCCTCCAGCCTGACGCTGTCCCATGGCAGTCCTGGAGTCTGGAGCGTGTCGCCCTCACCCTGGGCCACCGTTTTCCTGGCTGCCATATCTGGGTAGTCCGTGCATCCCGCATGTACCTACACAAGTTCAGCTGCTATCAGAACTTTGTAGAGAGTAACCTATTTGGAGCACCAGAACACTCTTCAGACTACGGAGCCATTCGCCATCTGAGGGCACTCCTGGGTCATGGCATGCAGCGGGCTGGTCTCCCAAATCCTTTACCCCCTCTTAGTGGTACAGCCACCCCTGGCCCCCTTCCAGCAGGTTTCACCCTTACCATAGTGGGCTTTAGTAAAGGATGTGTTGTTCTCAATCAAATAGTGTATGAGCTGGCTGGAGCTCGAGCAGACCCCGAACTGAGGCTGTTCCTAGACAGTGTCTCAGACATGTACTGGCTGGATGGAGGACACCCTGGTGGCGGTGAGACGTGGGTGACCGATAAATGTGCTCTGGATGAGCTGGCCTCCAGTGGGGTGGCTGTCCATGCCCACGTCACTCCGTATGAGGTGAGGGACCCGATGAGGGCATGGGTTGGGCGAGAGCACCAGCTCTTTATAAAGACACTGGAGGATCTGGGCGCCTGTCTGAGCCAGAAACTGCACTTCGAGGAGGAGCCGGCATCCATTGAGAATCACTTCCGAGTCATTCGGGAGTTCTGACTATTCTTGATCTATGCTTTCAAGTCTTAACATGGAGTGTATTCTTATGCAGAGCAGACAGCTTTGTATTGCACTGATGTATTAGTTAGAAAAAAGCTTTGGGTTTGCCTACCTAACACTAAATAGGTGAGAAGATTGAAGCTTAAAGGGATAGTTCACTGAAAAAGTGAAAGACTGTCATCATTTACTCGGCCTCATGCCGTTCCAAACCCGTAAGACTTTGGTTGATTGTTGAAACAAATTACGATATTTTTTTAATGGAACCTGAGAGGTTTCTGTCCCTCCAGTGAAAGTCCAGGTGACCAAAACTCAGAAGATCCAAAAAGGTCATAAAGAAGCAAGCGGTTTAAACCTTGTGAAGAGATATGATCACTTTATATGATGAACAGACTTAATGTATTTATTTATTCACATATAAACACACATAGAGCGCATCACATATAGTAAACACGGAAGCTCATGCGCACATAATGTACATTCATCATGTGCTAGAACAAACATCATTGGTTCTCATGAATCAAACATGCAGATTTGAGTTTCCGTGATGTTCTTCATGTATGTCCATCATTGTTTGGATGTAAATAAAAACCTAAATTAAATATGACCTTTTTTGGATCTTCTAAGATTTGGTTACCGGGACTTCCAATGGAGAAACCTCTTTTAAGTTTAATAAAAAATATCTTGAATTGTGTTTCAAAGATTAACAAAATTCTTATGGGTTTAGAACAACATGAGGGTAAGTAAATGATGACAGAATTTAAATTTTTGAGGTGAACTAATCCTTTAATGACAAAACATTTAGCTGCCTGACATTAAGCCTTATGTTTGCCTGTTGCATCTACCTACATAGGCTTTGTCTGATATACTAGGATACTTGTTTTACTTAGTCTATTTGGAATGCAGATTTGCTTAGTAAAACAATCAGCTCCTCATGTTTAAAGGGCTCTCATTTCCCAAGAATTATTAATTTGTTTTTATGTTGCTACGGTAAATTAATAAGCTTGGATTTTCATTTCAAGTATGTTTTGTTTTCTCAATTATGTATGGATACTCTTGAATGTAAAACACTAAACTTCCCTTAGTTTAACTTCCCTGAGTCCTGCTGCCCTGCTAAGGAATATTAAAACATTGCAGACAAGCAAATCCACTAAAGAGCAATATTACAGCCTCAAACTAAATTTCATGAGCGTCGTCCCATATACAATTACATTGGTTTATCATCACAAATGTGTTTGTGTTCAATAGTTGGTACTGCTTTTATTTAGTA

Function

GO:

id name namespace
GO:0005576 extracellular region cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000009_08054672_08056508.mRNA True 2669 mRNA 0.43 2 8054200 8057775

Neighbor

gene id symbol gene type direction distance location
CI01000009_08045921_08048630 NABP1A coding upstream 5046 8045519 ~ 8049154 (+)
CI01000009_08027345_08040961 NA coding upstream 13216 8025926 ~ 8040984 (+)
CI01000009_08002011_08021062 TMEFF2 coding upstream 33087 8001776 ~ 8021113 (+)
CI01000009_07982462_07999759 NA coding upstream 53894 7982250 ~ 8000306 (+)
CI01000009_07969738_07973990 NA coding upstream 80167 7969144 ~ 7974033 (+)
CI01000009_08118552_08120567 TYW5 coding downstream 60672 8118447 ~ 8120705 (+)
CI01000009_08170088_08177304 COL6A3 coding downstream 112313 8170088 ~ 8177369 (+)
CI01000009_08186704_08193700 ACKR3A coding downstream 128095 8185870 ~ 8194217 (+)
CI01000009_08203196_08206596 RPE, RPE.S coding downstream 144220 8201995 ~ 8206884 (+)
CI01000009_08232128_08270301 COL6A3 coding downstream 174025 8231800 ~ 8270533 (+)
G55557 NA non-coding upstream 104190 7949711 ~ 7950010 (+)
G55513 NA non-coding upstream 144837 7909050 ~ 7909363 (+)
G55476 NA non-coding upstream 161155 7892846 ~ 7893045 (+)
G55453 NA non-coding upstream 188383 7857959 ~ 7865817 (+)
G55417 NA non-coding upstream 257934 7796036 ~ 7796266 (+)
G55564 NA non-coding downstream 10607 8068382 ~ 8070551 (+)
G55606 NA non-coding downstream 25620 8083395 ~ 8086266 (+)
G55608 NA non-coding downstream 30011 8087786 ~ 8092210 (+)
G55572 NA non-coding downstream 57911 8115686 ~ 8117968 (+)
G55571 NA non-coding downstream 65655 8123430 ~ 8127288 (+)
G53651 NA other upstream 1805808 6245564 ~ 6248392 (+)
CI01000009_05931829_05943829 KCNH3 other upstream 2121399 5931718 ~ 5943899 (+)
G53388 NA other upstream 2515146 5522242 ~ 5540638 (+)
CI01000009_03202999_03207060 MPC2, MPC2.S other upstream 4845216 3202207 ~ 3208984 (+)
G51529 NA other upstream 4991613 3062033 ~ 3062587 (+)
G56100 NA other downstream 1071525 9129300 ~ 9130286 (+)
CI01000009_09853929_09854476 SAP18 other downstream 1795584 9853929 ~ 9856587 (+)
CI01000009_11761868_11765848 ORMDL1.S, ORMDL1 other downstream 3703011 11761606 ~ 11766944 (+)
G57811 NA other downstream 3876167 11933942 ~ 11935251 (+)
CI01000009_12432736_12435509 NA other downstream 4374783 12432538 ~ 12436017 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_037831 NA coding NC_007120.7 CM002893.2 24204180 ~ 24209083 (-)