CI01000009_08027345_08040961


Basic Information

Item Value
gene id CI01000009_08027345_08040961
gene name NA
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000009
NCBI id null
chromosome length 16003125
location 8025926 ~ 8040984 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000009_08027345_08040961.mRNA
CTATAAATGACTTAGTGTCTTTCCTTCTCTTTGTTCATTCAGACTGTTGAGCAAGGTTCAATACTGTACATTTTCAATGTCTGACCTGGCTTTATACCTTCAAATAACTCATAAGATGCATATGTGGTAAATTATCCTAATGCACTTATTTGTTAGTTTATTATTATGATTACTGTGAGCTGTCTGCTGGATGTTTATTGGACTTTCATCCTGCATAGTATTAAATGTATTGTAAAATATGTTGCTTGTTTTGTAAAAATATGATCATTTGCTCATTTTAATTAGTTTTTATTTTTATATTTCCTGTTTTTGTTTTAATGTAGTTCAATTTTTAATATTTTGTTGTGTTTTTATCATTTAGTTCTTTTTAAATATTTTTTTAATAGTTTTATTTGTTTTTTTTTTTCCAAGTTAAACTAAATGAAAATGAGAAATTTTGCATTTGCAACCAGCTAAAATAAAATAAGTTAAGGTTTTTCATATTTTATTTTATTTTAATTAAAGTTTATTTTATTTCAAGTAACAAAAGTTTTTGGTTTTAGATTTTTGGCTTCAGTTTTAGTTAACTATAATAACCCTGGTCCAAGCTGCTCTTTTCTGTATGAGAAAAGTAAATAGAGAGCATATTTTTAGAGCTTGACAGGCCCTGGTCCCCATCCAATTTTATTGTATGGAAAAAAGCAGCATGAATATTCTTAAAAACCTCTCTTTTGTGTTCCACAGAATAAAGAAGGTCATACAGGTTTGGAATGACATGAGGGTGAGTAAATATTGACAGAATTTTCATTTTTGAATGAACTATCCCCTTTAGCATAGCATTCATATAGAGAGTTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGCGTGGCATGGTGCCATGGCTACAGATTAACTGAGTTCACTGTCCAAACACAGATTTCCATATTTCCCCTTGTGACATTTCTCCAGTCAGCTGAGACAAAACACCAGCAGAGATTCATGAAGAAATGAAGAGACATTCAGGTGCATGTACACGGAAACAGATACAACCACATTCCTTCACACAAACACTTCTGTGGCTAGTGTTGCCTAAATATGCCTCACTAAACTATCAAAAACATTACTGACTGCAAATTCAAGCAGATCAAACAATACTGAAATTTGCACTGAGAAAAAATACACAAATGCAGTGGGACACTTTCACACTGACACTCTTTACTCACATTACTCTGATGGGCTGGGCTAACTACCACAGCAACCAGGCCCCTCCCCTGGGTGTGTGGGAAGTTTTTAAGTGGAGTGTTGGGAATGTTGTTTTTAGAGAGGTGCAGAAGGCAGGAGAGTGTCTGTGAGAGTCAACCTAACCACACCATTCAAAGCCACCAGCATTGACTCCAGGATGGGTGAAGACTCCTCTCACGCTGAGCGAAGCACAGCCACCTTACCCAGGGAGGAAAGCACCCCGACACCACCAGCTCCAGATGCTCAGGATGCTCAGGATCTCCTAATTCCGAGCTTCAGCCCCAGCTCGGTGCCCTCCTCACCTGTCAACACCCTTTCCCGTCTGGGTCCCAAGTCCCCCACCAGCCCCACGCCCCCTGGCAGCCAGGTCAGCGCCATCACGGTGGTGGCTCTGCTCGACAAGCTGGTGGTGATGATCGAGGCGGTGCAGGAGAACCAGCAGAGGATGGAGAAGAAGCAGGCTGAGCTGGAGGGGGCGGTCAGGGTGGTGCAAGGCGATGTGACTCGGCTTACTAAGAGCCACACGTCCACGGCCAACAGCGTGGCCAAGCTGCTGGAGCGCTCCCGCAAGACTGGCAACAACGTGAAGGAGGTGAGGGAGCGCCTGGATAAACAGAGCAGCCAGGTGAAGCGTCTGGAGGCCAACCACGCCCATCTGCTGAAGAGGAACCACTTTAAAGTAATAATCTTTCAGAAACTGGTTTGCCCAGAGTCAACACTGGTTTTGACTGGATCTCTGCCCTCGGGTGATGCAGGGTATTCAAAGGAGGACAACGAAATCCCCTCTACTCTGCTCACTAAAGATGGCCTGGCCTCCACCTCTCAGGATGAAATCGCTCCATCTGCACCAACTCCGTTCACTGATTTAAACCGCTCTCAAGATGAGGGCCTGCAGACCATCAGCCTCTCCTCCGAAGACAATGAGGAAAAAGGAGCAATGAGCCCCCTGGCAGAGGGCGGCAACGATTCCCTGGTGGATCTGCAAGAAGACAGTTTCCCAGGCTTGGGAAGTGAACATCTGGAGCGTTCTCGTGCTGACAAATTCAAGCGCTCCAGTCTGAAGAAGGTGGATAGTCTGAAAAAGGCCTTCTCGCGAAGCAACATAGAGAAGAAGATCAACAAGATCGTGCCTCCAGAACAACGCGAGAAGATCAAGAAAAGCTTCATCCCCAACCATCCGAAGAGCACCTCTTCCAAGAGCTCGTCTTTCCATGTCTCGCCAATGACCTTCAATGTCAAGAAGCTACGAGATGGAGACGCTGACTCCTCCCAGCAGCCCGGAAGCTCACCCAGAAACCTCAGCCCGGTGGAGGTTCCCAACATTGGGGGACCTGATGGTGAGCTGCCCCTGGCTGAGTTACACTCCCCAAGTGAAAAAGCAAACGGAGATGATCACCACAGCCCCTCCACACCAAGAAGCGCCGATGGAGAGGAAAGGCAATGTGTGTGCCAATCTGCCCTTTGTTATGCTGGAGTCCAGACTCTCTTCTGTCAGTGTACATAAGATTTAGTATTAAATTGTCTACA

Function

NR:

description
LOC402824 protein, partial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000009_08027345_08040961.mRNA True 2789 mRNA 0.45 4 8025926 8040984

Neighbor

gene id symbol gene type direction distance location
CI01000009_08002011_08021062 TMEFF2 coding upstream 4813 8001776 ~ 8021113 (+)
CI01000009_07982462_07999759 NA coding upstream 25620 7982250 ~ 8000306 (+)
CI01000009_07969738_07973990 NA coding upstream 51893 7969144 ~ 7974033 (+)
CI01000009_07555667_07623149 DNAH7 coding upstream 402008 7555667 ~ 7623918 (+)
CI01000009_07545007_07550103 NA coding upstream 475197 7545007 ~ 7550729 (+)
CI01000009_08045921_08048630 NABP1A coding downstream 4535 8045519 ~ 8049154 (+)
CI01000009_08054672_08056508 NA coding downstream 13216 8054200 ~ 8057775 (+)
CI01000009_08118552_08120567 TYW5 coding downstream 77463 8118447 ~ 8120705 (+)
CI01000009_08170088_08177304 COL6A3 coding downstream 129104 8170088 ~ 8177369 (+)
CI01000009_08186704_08193700 ACKR3A coding downstream 144886 8185870 ~ 8194217 (+)
G55557 NA non-coding upstream 75916 7949711 ~ 7950010 (+)
G55513 NA non-coding upstream 116563 7909050 ~ 7909363 (+)
G55476 NA non-coding upstream 132881 7892846 ~ 7893045 (+)
G55453 NA non-coding upstream 160109 7857959 ~ 7865817 (+)
G55417 NA non-coding upstream 229660 7796036 ~ 7796266 (+)
G55564 NA non-coding downstream 27398 8068382 ~ 8070551 (+)
G55606 NA non-coding downstream 42411 8083395 ~ 8086266 (+)
G55608 NA non-coding downstream 46802 8087786 ~ 8092210 (+)
G55572 NA non-coding downstream 74702 8115686 ~ 8117968 (+)
G55571 NA non-coding downstream 82446 8123430 ~ 8127288 (+)
G53651 NA other upstream 1777534 6245564 ~ 6248392 (+)
CI01000009_05931829_05943829 KCNH3 other upstream 2093125 5931718 ~ 5943899 (+)
G53388 NA other upstream 2486872 5522242 ~ 5540638 (+)
CI01000009_03202999_03207060 MPC2, MPC2.S other upstream 4816942 3202207 ~ 3208984 (+)
G51529 NA other upstream 4963339 3062033 ~ 3062587 (+)
G56100 NA other downstream 1088316 9129300 ~ 9130286 (+)
CI01000009_09853929_09854476 SAP18 other downstream 1812375 9853929 ~ 9856587 (+)
CI01000009_11761868_11765848 ORMDL1.S, ORMDL1 other downstream 3719802 11761606 ~ 11766944 (+)
G57811 NA other downstream 3892958 11933942 ~ 11935251 (+)
CI01000009_12432736_12435509 NA other downstream 4391574 12432538 ~ 12436017 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location