G27660


Basic Information

Item Value
gene id G27660
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035899.1
NCBI id CM008302.1
chromosome length 74127438
location 52181616 ~ 52183216 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU37109
tctgtctgtccTGCTATCTCAGCAACCTCAGCCTCTGCCCCACTGGACACCTCTCTACCTCTTCTGAGTGCTACACCGGTCTCCCTCCCACAGACTGTCAGCACATCCAGTCTGCCACCCCCCACCTCCACCCTCCACCTCTCTGCAGACCAGGTCACAGGGGCGCTGAGGAGACTCCGCTCAAGGAAAGCAGCTGGACCTGACGAGGTGAGCCCAAGACTTCTCAAGGCTTGCGCCTTTTGAACTTGGATTACCCTGTCGAAcatcttcaacatgagcctgcaGTTGGGAGGGTTCCAACGCTGTGGAAAACCTCATGCCTGGTCCCTGTTCCCAAGAAACCTCGCCCCAGTGAGCTCAATGACTTCAGGCCAGTAGCTTTGACCTCCCACATTATGAAGACCtgcacaacagacagactcagaaaatccttcattccgagagccatcagactctttaactcctcccatcggggacgggatgctgctactgactgagtttaactcagtcacaccacatggactttattactccaccacttaattatt

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU37109 True 548 lncRNA 0.54 2 52181616 52183216

Neighbor

gene id symbol gene type direction distance location
lztfl1 lztfl1,LOC107701792 coding downstream 686344 51484768 ~ 51495272 (-)
LOC103045300 NA coding downstream 699740 51465284 ~ 51481876 (-)
LOC103038926 NA coding downstream 721533 51455657 ~ 51460083 (-)
gli3 gli3,LOC102779559,LOC108444237,LOC107675308 coding downstream 760224 51245789 ~ 51421392 (-)
pnrc1 NA coding downstream 1003265 51174484 ~ 51178351 (-)
LOC103029105 NA coding upstream 81832 52265048 ~ 52272380 (-)
cgrrf1 NA coding upstream 191300 52374516 ~ 52382949 (-)
LOC103031417 gjd2b,LOC103031417,LOC108414321,LOC107582173,LOC107740303,LOC105892965 coding upstream 255241 52438457 ~ 52445807 (-)
LOC103031734 zgc:86709,actc1,ACTC1,actc1a,act2,LOC108414322,LOC106531354,LOC105024319 coding upstream 268087 52451303 ~ 52456147 (-)
LOC111188512 NA coding upstream 301518 52484734 ~ 52490887 (-)
G27645 NA non-coding downstream 88888 52090754 ~ 52092728 (-)
G27632 NA non-coding downstream 176872 52004247 ~ 52004744 (-)
G27630 NA non-coding downstream 243261 51938101 ~ 51938355 (-)
G27628 NA non-coding downstream 275149 51906087 ~ 51906467 (-)
G27626 NA non-coding downstream 281493 51899547 ~ 51900123 (-)
G27689 NA non-coding upstream 120385 52303601 ~ 52303977 (-)
G27690 NA non-coding upstream 125132 52308348 ~ 52308767 (-)
G27738 NA non-coding upstream 182625 52365841 ~ 52401196 (-)
G27755 NA non-coding upstream 296046 52479262 ~ 52479538 (-)
G27798 NA non-coding upstream 537445 52720661 ~ 52779893 (-)
pcmt1 pcmt1 other downstream 1441182 50725063 ~ 50740434 (-)
LOC103034285 NA other downstream 1641944 50522899 ~ 50539672 (-)
G27400 NA other downstream 1649977 50481889 ~ 50531639 (-)
G27258 NA other downstream 2542172 49638759 ~ 49639444 (-)
G27145 NA other downstream 3290588 48886994 ~ 48891028 (-)
LOC103040973 NA other upstream 110664 52293880 ~ 52321920 (-)
G27821 LOC108413844,LOC108411774,LOC108411773,LOC108417426,LOC108417958 other upstream 603256 52786472 ~ 52849906 (-)
trnal-cag NA other upstream 1438855 53622071 ~ 53622358 (-)
akap7 NA other upstream 1559664 53742880 ~ 53907412 (-)
LOC103040805 NA other upstream 1866579 54049795 ~ 54055697 (-)

Expression


Co-expression Network