G27690


Basic Information

Item Value
gene id G27690
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035899.1
NCBI id CM008302.1
chromosome length 74127438
location 52308348 ~ 52308767 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU37142
tccagaaaaagaaaagttgatgcagacggacggctgtgcttcaaggcgaaagaccggtatgcattttgtgttactgaccaaaataaacgctttttagaagagatataaattatgtgtaaatatttataagacaatagctgataaaatctgttttaatgaggttaataaacatcactgtgacatcgctagtcgcagtttcacctcagcaaaggacgaggaggtgaatcacttatctaaccagcctttactgatttctgcccccaataaccctttcaataacctccaatagcctttaatagtctccagtagccttcaacagtctaaccttgcagccgtggtgtgttctaaactccgtagttataaacatcctgaggttagcagcgcgctaactgacctgtttataatgtaatccgagcagtg

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU37142 True 420 lncRNA 0.39 1 52308348 52308767

Neighbor

gene id symbol gene type direction distance location
LOC103029105 NA coding downstream 35968 52265048 ~ 52272380 (-)
lztfl1 lztfl1,LOC107701792 coding downstream 813076 51484768 ~ 51495272 (-)
LOC103045300 NA coding downstream 826472 51465284 ~ 51481876 (-)
LOC103038926 NA coding downstream 848265 51455657 ~ 51460083 (-)
gli3 gli3,LOC102779559,LOC108444237,LOC107675308 coding downstream 886956 51245789 ~ 51421392 (-)
cgrrf1 NA coding upstream 65749 52374516 ~ 52382949 (-)
LOC103031417 gjd2b,LOC103031417,LOC108414321,LOC107582173,LOC107740303,LOC105892965 coding upstream 129690 52438457 ~ 52445807 (-)
LOC103031734 zgc:86709,actc1,ACTC1,actc1a,act2,LOC108414322,LOC106531354,LOC105024319 coding upstream 142536 52451303 ~ 52456147 (-)
LOC111188512 NA coding upstream 175967 52484734 ~ 52490887 (-)
LOC103032373 meis2b,LOC103032373,LOC108413876,LOC107582109,LOC107664830,LOC107668148 coding upstream 217001 52525768 ~ 52554272 (-)
G27689 NA non-coding downstream 4371 52303601 ~ 52303977 (-)
G27660 NA non-coding downstream 125132 52181616 ~ 52183216 (-)
G27645 NA non-coding downstream 215620 52090754 ~ 52092728 (-)
G27632 NA non-coding downstream 303604 52004247 ~ 52004744 (-)
G27630 NA non-coding downstream 369993 51938101 ~ 51938355 (-)
G27738 NA non-coding upstream 57074 52365841 ~ 52401196 (-)
G27755 NA non-coding upstream 170495 52479262 ~ 52479538 (-)
G27798 NA non-coding upstream 411894 52720661 ~ 52779893 (-)
G27808 NA non-coding upstream 473258 52782025 ~ 52782480 (-)
G27822 NA non-coding upstream 488798 52797565 ~ 52816766 (-)
pcmt1 pcmt1 other downstream 1567914 50725063 ~ 50740434 (-)
LOC103034285 NA other downstream 1768676 50522899 ~ 50539672 (-)
G27400 NA other downstream 1776709 50481889 ~ 50531639 (-)
G27258 NA other downstream 2668904 49638759 ~ 49639444 (-)
G27145 NA other downstream 3417320 48886994 ~ 48891028 (-)
G27821 LOC108413844,LOC108411774,LOC108411773,LOC108417426,LOC108417958 other upstream 477705 52786472 ~ 52849906 (-)
trnal-cag NA other upstream 1313304 53622071 ~ 53622358 (-)
akap7 NA other upstream 1434113 53742880 ~ 53907412 (-)
LOC103040805 NA other upstream 1741028 54049795 ~ 54055697 (-)
LOC111188920 slc35f1,LOC107549682,LOC107743307,LOC107697151,LOC107678858,LOC107727669,LOC106571386 other upstream 2248121 54556888 ~ 54623840 (-)

Expression


Co-expression Network