CI01000010_01064881_01066044 (GPR173)


Basic Information

Item Value
gene id CI01000010_01064881_01066044
gene name GPR173
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000010
NCBI id null
chromosome length 12265998
location 1064279 ~ 1066408 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000010_01064881_01066044.mRNA
ACTTCAAGCTATTTAACGCTTCTTGACCTAAAAATCTTTTTTTCCCCAGGCATTACAGAAAAGATATACTTACAGTAGTCAGTAGTATTTGTGGCCTTTAAAGACCAGCATTTGTTTGTAACAAATGTTTTGTTCTTTGTTAACAGGTGTGGAGGCACGTTTGAAGGGACGTTCCAAAGAGAACTATACAAAATGGGGCAATGCATATCAAGCTTCTCTCCTTCCATTTGAGACAACAACGAAAGGCAACCACGAGGACGGACGACAGCTCAGCTGGAGGTGGCGGAGGTGGAGGAGGGAGTGGAGGAAGTGGGGGTAAAGGAGGAGTTGAAGGAGGAGGTGTGCAATTTCAGCAGCAAAAGGTATGGCCAACGGAAACGCAAGCAGTGATGGGCCTGGGAACCCCTTGGCAGCTGTGGTGTCCACGACAGGTGGCATGATGGGTGGAGCACCTTCTTCAGCTGTATCTACCTATGTGAAACTCGTCCTTCTGGGGCTGATCATCTGCATCAGCCTGGTGGGCAACTTAGTGGTATCTCTGCTGGTGCTAAGGGACAGAGCCCTACACAAGGCACCCTACTACTTTCTTCTGGACCTCTGCCTCGCTGACACCATCCGTTCGGCGGTCTGCTTTCCCTTCGTGCTGGTGTCCATCAAGAACGGCTCGGCCTGGACTTACAGCGTGCTCAGCTGCAAGGTGGTGGCCTTCATGGCCGTCCTTTTTTGCTTCCATGCTGCCTTCATGCTGTTCTGCATCAGCGTCACACGCTACATGGCTATCGCCCACCACCGGTTCTACTCCAAGCGAATGACCTTCTGGACATGCGTGGCGGTGGTATGTATGGTCTGGACGCTATCGGTCGCCATGGCATTCCCGCCTGTCTTTGATGTCGGCACCTACAAGTTTATCCGCGAGGAGGACCAATGCATCTTCGAACATCGCTACTTCAAGGCCAACGACACATTAGGCTTCATGCTGATGCTGGCTGTGCTAATCTTGGCCACTCACGTGGTGTACATGAAGCTTCTGCTGTTCGAATACAAGCACCGAAAGATGAAGCCGGTCCAAATGGTTCCAGCCATCAGCCAAAACTGGACCTTTCATGGACCTGGAGCCACAGGCCAGGCGGCCGCAAACTGGATAGCAGGGTTCGGCCGTGGCCCAATGCCTCCCACTTTATTGGGCATCAGGCAGAACTTGCACAACCAGAACAGACGCCTGCTAGGCATGGAGGAGTTTAAGGCCGAGAAGCAGCTTGGCAGGATGTTCTATGTCATCACCTTGTTTTTTCTGGTGCTTTGGTCCCCGTACATTGTGGCCTGTTACTGGCGGGTCTTTGTGAAGGCGTGCACCATTCCGCACCGGTATCTGTCTACTACGGTGTGGATGAGTTTCGCCCAGGCTGGTGTGAACCCCATCATCTGCTTTTTCCTCAACAAGGAGCTGAAGAAGGGTCTGCTGGCCCACCTGCCTCCCTGTTGTAGAACTCCACCTCAACTGCCCCGTGAGCCTTACTGTGTCATGTGAAGATGAGTGTTCATTCATAATGTTCATTTTTTTATGTTCTTTCTCTTCTGGATGGTTGGAAAGTGGACAGCCAGGGGGAGGGAATAAGAGGTCTGTAATGATGGAGACATGGACAAACTTTAAGAGCTGTTGTGGCCTTTGATTCAGTTTAAGATGCTTTAAAGAGGTGGATGTCACAGAATAAGCATCTACTGTCACCTTAATGATTTTAAGGGCAAAATGGGCTCTACGCTAATATGTGGTTTGATAAATCAACTCTGAACAGGTTTGAAGAACCGTATGTTTCGCGTTAGGGTGGTACAAATTCACAAATCAACCAAACTGATGGTCTATTTTATGGTGAATGTATGAAGGCTATATCAAATGGCTTCTTATGATCGATCTCAACAAACATTACCATTTGATTTGACTCAGTATCTGAATTCCTTTACCAGGATCCTGAGGGCCTCGAATCAAAGATTTGCAAAAATATTCATATTCATGCCTTGTGAACAGCTGCACTCCTGGCAGAGTAATTTATATTATTTGAACTAGTGATTCAAAAATACTCGACGTGCATGTGTATTACCTTATCTTTAAGGGGAAACAAACTTGAGATTAAA

Function

symbol description
gpr173 Predicted to enable G protein-coupled receptor activity. Predicted to act upstream of or within G protein-coupled receptor signaling pathway. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in plasma membrane. Is expressed in several structures, including digestive system; heart; integument; nervous system; and pleuroperitoneal region. Orthologous to human GPR173 (G protein-coupled receptor 173).

GO:

id name namespace
GO:0004930 G protein-coupled receptor activity molecular_function

KEGG:

id description
K04300 SREB3, GPR173; super conserved receptor expressed in brain 3

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000010_01064881_01066044.mRNA True 2130 mRNA 0.48 1 1064279 1066408

Neighbor

gene id symbol gene type direction distance location
CI01000010_01049083_01049298 NA coding downstream 14754 1047761 ~ 1049622 (-)
CI01000010_00964665_01011716 NOL4L, NOL4LA coding downstream 52563 964310 ~ 1011716 (-)
CI01000010_00952202_00958971 PTK6 coding downstream 104896 951892 ~ 959383 (-)
CI01000010_00929453_00930078 NA coding downstream 133742 929061 ~ 930537 (-)
CI01000010_00902754_00903080 NA coding downstream 161049 902517 ~ 903230 (-)
CI01000010_01146061_01150177 WASB coding upstream 79594 1146002 ~ 1150177 (-)
CI01000010_01156828_01164899 SLC38A5, SLC38A5B coding upstream 89737 1156145 ~ 1164899 (-)
CI01000010_01213593_01220154 NA coding upstream 147135 1213543 ~ 1220431 (-)
CI01000010_01252844_01259859 NA coding upstream 186276 1252684 ~ 1259859 (-)
CI01000010_01263995_01266695 NA coding upstream 197423 1263831 ~ 1266695 (-)
G61159 NA non-coding downstream 1791 1061214 ~ 1062488 (-)
G61090 NA non-coding downstream 10442 1052544 ~ 1053837 (-)
G61161 NA non-coding downstream 19134 1044629 ~ 1045145 (-)
G61160 NA non-coding downstream 23066 1038229 ~ 1041213 (-)
G61938 NA non-coding upstream 172556 1238964 ~ 1239315 (-)
G61939 NA non-coding upstream 173336 1239744 ~ 1240282 (-)
G61888 NA non-coding upstream 178061 1244469 ~ 1246018 (-)
CI01000010_01267502_01268853 NA non-coding upstream 200817 1267225 ~ 1269174 (-)
G61954 NA non-coding upstream 267586 1333994 ~ 1334194 (-)
G61045 NA other downstream 488768 572753 ~ 575511 (-)
G61965 NA other upstream 358017 1424425 ~ 1545051 (-)
CI01000010_03527436_03530341 NA other upstream 2463262 3527408 ~ 3530359 (-)
CI01000010_03890095_03899058 SSBP3B, SSBP3, SSBP2 other upstream 2823661 3890069 ~ 3899058 (-)
G64237 NA other upstream 3163542 4229950 ~ 4236416 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_036433 gpr173 coding NC_007119.7 CM002892.2 23415023 ~ 23416362 (-)