cdpf1 (cdpf1,LOC107695897)


Basic Information

Item Value
gene id cdpf1
gene name cdpf1,LOC107695897
gene type misc
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035903.1
NCBI id CM008306.1
chromosome length 40813162
location 3840601 ~ 3846469 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU83339
ACTCGGGTGAGGGGGCTGTGAGAGGGGTCTTCACCTGCGAGCTGTGTGAATTATCTAGTCCCTACACTTTCTACGGTCAGAAACCCCCAAATACCAGAGGCATAGTGCTTTTGGAGGAGTGCTATGGCATGCGTGATCCCTTCAgtccagagaaagagaaattccTAGTGTTGGGGTCTAAATGTTGCCTGTGTAACAAGATTGTGTGTGTCGGCACGTGCAGCCTCTTCTACACCAAACGATTCTGCTTACCATGTGTGAGGGAACACCTGCACCAGTTTCCGGAGCAGATTCAGACAGAGCTGGCTAAGAAAAAACCTACTCAGAAATCTTGATGTTCAACACCCCTGTTTTGTTCGAAAGGACAATTAtgacacactggattaaaaaaacactggctTTTCAATCCCTTGTTTTGAGGTGCTTACAGAATTAAAGCTTTCTTTTTGGATGAAGTCTAAAGAGGCAGCAGTTTTTGAGCCAAACCTGCTTGACAGATGGACTCCAGAAGATGAATGACAACAGACATGCGGCCAAGTGTGCACGACAGTGTGTTTGTGGAGGCTCTGTGGATGTGGCTCTGACTGTGTTGTTACTTTATGGGTTCAAGTTCAGCTTTTTGTTGTTTCAAAGAACAGCCTGCTGGATGACGCATGGGTCACATCTGTTAAGAATGTAAGTGAGAAGTGGCTTGGCTTTCCTCTGAAACACACATCTCTCCTGCAGCTCAGATCCTGTTTGCATTCAAATAACATGTAGAGATGCCGTGTGATTGATGGCGCTGAGGAGCATCTGAGGCACTGAGCTGAATTGTCACTGttggaaataaactagaaactTATTTTGGTTCTGAAAATCACAGCTCATTTTGGGACATCTGGTACAGTGTGAGATCAATATCAGACc
>XM_007232276.3
tcagtgtcttcatgaggaagagtcacttggaatagttttctcagcgtcttgaagaagTTACCGGAGGTGCCGaataatagttgctgcttttcctttatgCTGTGCTCCAGAAAATCACCTAAATCAGAATATCAATCAAATCGCCCATCTCAGATGATCAGCAGGTGGCGGTAAATTCCTACAAGACGCCAAACATCAGCGAACCCTAGAAGAAACAAGATGGACTCGGGTGAGGGGGCTGTGAGAGGGGTCTTCACCTGCGAGCTGTGTGAATTATCTAGTCCCTACACTTTCTACGGTCAGAAACCCCCAAATACCAGAGGCATAGTGCTTTTGGAGGAGTGCTATGGCATGCGTGATCCCTTCAgtccagagaaagagaaattccTAGTGTTGGGGTCTAAATGTTGCCTGTGTAACAAGATTGTGTGTGTCGGCACGGAGTGCAGCCTCTTCTACACCAAACGATTCTGCTTACCATGTGTGAGGGAACACCTGCACCAGTTTCCGGAGCAGATTCAGACAGAGCTGGCTAAGAAAAAACCTACTCAGAAATCTTGATGTTCAACACCCCTGTTTTGTTCGAAAGGACAATTAtgacacactggattaaaaaaacactggctTTTCAATCCCTTGTTTTGAGGTGCTTACAGAATTAAAGCTTTCTTTTTGGATGAAGTCTAAAGAGGCAGCAGTTTTTGAGCCAAACCTGCTTGACAGATGGACTCCAGAAGATGAATGACAACAGACATGCGGCCAAGTGTGCACGACAGTGTGTTTGTGGAGGCTCTGTGGATGTGGCTCTGACTGTGTTGTTACTTTATGGGTTCAAGTTCAGCTTTTTGTTGTTTCAAAGAACAGCCTGCTGGATGACGCATGGGTCACATCTGTTAAGAATGTAAGTGAGAAGTGGCTTGGCTTTCCTCTGAAACACACATCTCTCCTGCAGCTCAGATCCTGTTTGCATTCAAATAACATGTAGAGATGCCGTGTGATTGATGGCGCTGAGGAGCATCTGAGGCACTGAGCTGAATTGTCACTGttggaaataaactagaaactTATTTTGGTTCTGAAAATCACAGCTCATTTTGGGACATCTGGTACAGTGTGAGATCAATATCAGACctcatattaaacatattaaagtgGATTATCTATGTTTAAGAAAATGTTGAATTTGTGTGTCTGCTGTTCTACAAGACATATGCTCAGTTCTTGATGCTCTTAATGCCAAACAAATTAAATTCTTATTTATGCATCAGTAGTTTAGCTTCCCTCGTTAGGTTCAGGTATTTTGGCTCAAAGTGTTTTATTAGCAATAAGCAAGTCAAGTGATTTTATTGAAGATCCTGTATAAATTGCAATTAAATTTTCTTCAGGCCTGTGGTGCAATACACAACTGCAGCACTTTACACAGAGCATCAGAGTTTAAATACACAGACATATCAAAATATAATTACCACCACATTACATGTCAGTCATTGGCATAACAATGGTGTCCAACAGATCATTAATGCCAGAAGGACCTTTGTGGGGCAATCTGAGGAACCTCAATACTCTGCTTCAATTGCTCACCTAAATTTAGGTATCCTCCAgcttaatatcttaatattttaatatgactGTCCACAATAAAGATATAGGATACTTATACAGTGAAAAACTAAACAGGACAACCAGACAATATGCAGATGTACACAGTATATGCAAACGTTTGCCCTCAGTTACAATGAGAATAGATAATGCATAAATCTAACaattaattttctgttttaagaAAGATTACTTTCATTTCAATATTTAACAGTTTTGATCCAGAAATGTCAATGCATGGTCAGAACCCAATTTTGCACGTATTCTAGCTTGTAAATACTTGTTTTTGAGTTCTTAAGTTATTAGAGATTTGAGCTAATGCCCCGCCAATCTTTAAATATGcctaaaatgtgaaaaaatatttgtttgtcTTTTGAAAATCCGTTCATTGAAACAGAAACAGGCTTTTTGATGaggggtacccaaacttttgcatgctACTTTATGTGGATTAGGACAAAGTAGCATTTAAGTGGAAGTATGTCAGTCATAGCAGCATTTAAGGATTTAAAACACAGAGTCAGTGATGTTTAAGTGCATTTATGACAGCACATAAACCATGTTCATtcttaaaacactgtaaaaaaaagtagttacataaaattacattagacattgtgtgaaaatgtgtaaaCACTGAAACAATATAGAGTAatgactcttttttttaatgtttgaagACATCTCCAGCGGTGTAGAATGGATGGAATCCTTAAACAAAGCTAGAAAAGGGTTCATAACAACgtttttagctttaaaaaaaatcaataacaaGGAGTGAGTGTTGTATATCCAGCCCTAGCCACTAGATGTCAGTGAAAGTATTTGTGTTGACGGTTTCCAGATCAAAATGTTTCTGGAGTGAGGTGAAGAGAGCAAAATCatgaattatattatttacaaaaaagaaaataaattaaatacaaatcaagaaagctttgattaatatttatatataacttaGATAGGATGAATTTAATAAGTTTGCTGTTGCTAGTTCACTTGGAAAAAAGACAGTCAGtcacttaaccctttcagacacaTTCCTttcaaaatgtcagatttagtcattaaattaaacaaatcattaaattaaaacagatttgGGGTTCAAATCTGTTTTAGAGAAATGCCTGTCGAGAAATGCCTGTGTATAGCGTGTCTATTAGTAGTGGCTCAGTTTGTGAATTACATTCCTGGCTGTAGGGGAaacttaatgctgctttaatatttgtgttgtagtttatttttaaaatatatgtttagtgtttttaatgtcCTCTAGGCCTAATTGTACTatgattggctcattttttacCTTTGCCCATGCTCTTGCACttgctcaaaatatttaaagaagttAAAGGCCCAGTCACCAACTTGGCTTTAAAGACGGTTGCCTATAAACAACCACAGCTTTACCAGTTTTACAAGTACTGTCGCTTGTGTTAACCATTAGAGTCGTTACATGTCTTGTTCATTAAGTCACATACTGGCTTATTCCTACACCAACCATCAGGTTTCGCAACAGCAGTTACCCATTATTGATATGCATTATTAGATTTCATAATTGCCTCGTTTGTCATTAAACTGATTCTCAACTGTT

Function

symbol description
cdpf1 Orthologous to human CDPF1 (cysteine rich DPF motif domain containing 1).

NR:

description
cysteine-rich DPF motif domain-containing protein 1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU83339 False 906 lncRNA 0.45 3 3842674 3846010
XM_007232276.3 True 3205 mRNA 0.37 4 3840601 3846469

Neighbor

gene id symbol gene type direction distance location
LOC103030485 NA coding downstream 2099 3834332 ~ 3838502 (-)
rint1 rint1,LOC107725664,LOC107733011,LOC107553890,LOC107664862,LOC107695894,LOC107590313 coding downstream 137371 3695187 ~ 3703230 (-)
LOC103044476 NA coding downstream 369048 3467202 ~ 3471553 (-)
grip1 grip1 coding downstream 814734 2673173 ~ 3025867 (-)
tmbim4 tmbim4,LOC107587136,LOC107655596,LOC107567270,LOC107757272,LOC107694279 coding downstream 1172103 2661803 ~ 2668498 (-)
LOC103036484 NA coding upstream 9073 3855542 ~ 3865736 (-)
LOC103036181 LOC108438810,LOC108279896 coding upstream 22269 3868738 ~ 3889640 (-)
LOC103029733 LOC108438795 coding upstream 53732 3900201 ~ 3915629 (-)
LOC103029416 LOC108438794 coding upstream 72548 3919017 ~ 3930603 (-)
wnt7b wnt7b,wnt7ba,LOC103028473,LOC107695867,LOC107725526,LOC107732964 coding upstream 122377 3968846 ~ 3990482 (-)
G61670 rap1b,LOC106576640,LOC107695907 non-coding downstream 198084 3562771 ~ 3642517 (-)
G61630 NA non-coding downstream 324786 3512201 ~ 3515815 (-)
G61611 NA non-coding downstream 441831 3398558 ~ 3398770 (-)
G61610 NA non-coding downstream 442829 3396720 ~ 3397772 (-)
G61609 NA non-coding downstream 444744 3394778 ~ 3395857 (-)
G61754 NA non-coding upstream 559 3847028 ~ 3851116 (-)
G61760 NA non-coding upstream 90215 3936684 ~ 3937790 (-)
G61785 NA non-coding upstream 162968 4009437 ~ 4009943 (-)
G61818 NA non-coding upstream 164319 4010788 ~ 4013340 (-)
G61833 ppara non-coding upstream 227300 4073769 ~ 4075972 (-)
G61676 NA other downstream 182333 3650845 ~ 3658268 (-)
mdm1 NA other downstream 291899 3529520 ~ 3548702 (-)
G61587 NA other downstream 525362 3314153 ~ 3315239 (-)
LOC103031776 NA other downstream 1306248 2464834 ~ 2534353 (-)
LOC103032312 LOC103032312,LOC108426389 other downstream 1382475 2454547 ~ 2458126 (-)
LOC103039416 cald1a,LOC108425386,LOC107656362,LOC107725991,LOC107658884,LOC107710121 other upstream 488649 4335118 ~ 4426156 (-)
G61942 NA other upstream 775744 4622213 ~ 4622577 (-)
G62377 NA other upstream 2528000 6374469 ~ 6374980 (-)
pphln1 pphln1,LOC108279830 other upstream 2786541 6633010 ~ 6695389 (-)
G62484 NA other upstream 2825141 6671610 ~ 6737948 (-)

Expression


Co-expression Network