G61670 (rap1b,LOC106576640,LOC107695907)


Basic Information

Item Value
gene id G61670
gene name rap1b,LOC106576640,LOC107695907
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035903.1
NCBI id CM008306.1
chromosome length 40813162
location 3562771 ~ 3642517 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU83232
TGCATTTCAAATACTGTGGTTCTATCTCTCTCAGGCCAAGGTTTAGACATCAGCGAGATGTCTCCTTTTACTGCTTGTGCCCGTTtgcttaaaattttttttttccttctcttatgaacaaaactgtaacaaGGCATTTGCTTACAGGATCAGACGAGGATCAGACATCGGTTAACCTGCGTCCATCGCTGTTGTGTTCCTCACAGAACGCATGCATAAAGCGTTCATTATGCACATTAACTGTACATTATATTCAGTCTCAAAATGCAGAGTGCGGATGCTGGCGCTGGGGGGAAACGCCGACGGTGGTTAGAGACTGCGAGTCACTGTGTTCCAGTTCACCCAGCGCTTATGAATACTTTATGAATGCCTCGTAGGATTGCACTTGGTACAACatggtcattgtttttttttctgatttatttcttcttctttcattGTTCCCTTTTCTCCCTGCTCGTTAGCGCAAGGTCCCCACCCCGACATTCACTACAGTTAACCCCACAGGAACGCAGACAGAAAACAGGTCAAACCAAGTATTACAAAGGTGAAACAGTCACTAACAGGCAAGATATTTTCTTTACTGGAAAACCATCCAATATCTGGTTTTCATATCCTCGGTTTACCAGATGTATTCGCAGGCAAAAGGGAAGGGGAAGGGCTGGGTGGGGCGGAGTCACACACAGTGAAAATCTACAGTAACTGGACTGATGACATTTgttccattttattttatattaaaacccCCCCagttctttaaaatatatactgtatacctcCTGTAGTAGACAAGGGGAAAAGTCTGTAATGAGGGACTGGACTGTTTTTAACTGTCAGCTCTGCCGAGATGTGAGATCATAGAGGGCTACATTATGACATCACGACCATCCTAGACTCTCACTGCTGAGGCATTAAAATCGCCAAGTCCCTTTCAAAAGTGGCCCCTTTTTGAAACCCCGCCCAGTGTACAAACATATCCgtaaatgagacaaaaaaattataaaaatggcaTGAGATGGGCTGTgagtttgctttgtttttttttggtaattttttgttacattttgtttCGATTCTcctgaaaagaaaaggaaaaaaaaagatctaaacACATATTTGAAGGCAACATTTGAGGCTAAGAACAACATGATAGTGACagaaaacattatatattttttgttttactttttacacgTACATCACTGAATCCACAGGTTTTCCTAGAGATAAAACTCATGTCAATAGTTCTTGCGATATACCATCTCAGCAGAGCAGAAACAAATTCtagtaactttaaaaaaagagagaaagaaaatcaagaagaaaataaaagcaaaaaagaaaagaaaaagttacaaaaaacaaaagagaaatgcaCAGAAACCAAGGAGCGAAGTTAGCTGTATGAAATGGACTATATAGGCGCTCTTTGGACTTCCTCTCATCTCTGGCTAAAATAGTGGTGCTTATAAATATCGCATCATTGTAATTGCCATGGCAACGTGCACAGTCAGGTTCAACACCCGCTCCATACATTTGCAACGGTGGCTGTCTCCGTTAGCAATAACACTGTGTGTAGgcgctgtgtttttaaaattcttttagctctttatttgtttatccaTGTAATTACTTTTCTATTTCAGTTGCATACAgttagaatatatatttatatatttataagtaaaAATCTCTTTCTTGCGACACTGGAAAGTGATCATGGTTATCTATGTGCAAAAAAACTAACATGATACTGTAGCTTTGAAtctgttggttggttggttggttggttggttggtttgcttGGTCGGTTGGTTGGTTTTGTTAAAGGGGCATCACCACACAGGAAAGTCCATTCGATGTTAGGTTTTAGTAACGTCGGAATGCTGGCACTGCTGAGAGACACAGCAGCAAATCAGacCTGGCTCAGAGCGACAGAACAGCTGTGTATTAGAGCAGCTGGCAGTTGGACTTTTTGCGTGTCTTCCCAGGTACTGGAGTTTTCCTGTTGATTTGCCGGACCAGGTCATAGAAGATCTCATTTACATTAATCTTGGACTTTGCGGAGGACTCCAGGAAGGCGCAGCTGTTCCACTGACGGGCAAGGTTCTGTCCCTGCTCCTTTCCCACCACTCTTTCATCCTCCAGATCACACTTATTCCCCACCAGGATCATTGGCACGTCGTCAGTGTCTTTAACTCGCAGGATCTGTTCTCTCAAGTCCTGCAGGTCGTTGAATGTGGACTGTGCCGTTATGGAGTATACTAGTGCGAAGCCCTGGCCGTTCTTCATGTACAGGTCCCTCATGGCTGTGAATTGTTCCGTCCCTGCAGTGTCCAGAATTTCCAGCATGCATTGCTGGCCATCCACTTCCACTTGCTTCCTGTACGAGTCTTCTATTGTAGGGTCATACTTCTCCACAAAGATCCCTTGAACAAACTGAACAGTCAGTGCAGACTTGCCGACACCTCCAGAGCCGAGGACTACTAACTTGTATTCACGCATTATGCAGTGTGTCCAATATcacAGATCCGCTCCGGAGCTCCAACCCGATGTAcgcctctctctttccctttctctccctttctccctctctctatcgctctatctctctctacagcttgctagctccc
>TU83233
TGCATTTCAAATACTGTGGTTCTATCTCTCTCAGGCCAAGGTTTAGACATCAGCGAGATGTCTCCTTTTACTGCTTGTGCCCGTTtgcttaaaattttttttttccttctcttatgaacaaaactgtaacaaGGCATTTGCTTACAGGATCAGACGAGGATCAGACATCGGTTAACCTGCGTCCATCGCTGTTGTGTTCCTCACAGAACGCATGCATAAAGCGTTCATTATGCACATTAACTGTACATTATATTCAGTCTCAAAATGCAGAGTGCGGATGCTGGCGCTGGGGGGAAACGCCGACGGTGGTTAGAGACTGCGAGTCACTGTGTTCCAGTTCACCCAGCGCTTATGAATACTTTATGAATGCCTCGTAGGATTGCACTTGGTACAACatggtcattgtttttttttttttttttttttttttttttttt

Function

symbol description
rap1b Enables MAP kinase kinase activity. Acts upstream of with a positive effect on hematopoietic stem cell differentiation. Acts upstream of or within chordate embryonic development; convergent extension; and heart development. Located in cell-cell junction. Is expressed in several structures, including brain; cardiovascular system; floor plate; hindbrain neural plate; and mesoderm. Orthologous to human RAP1B (RAP1B, member of RAS oncogene family).

NR:

description
ras-related protein Rap-1b

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU83232 True 2633 lncRNA 0.42 8 3562771 3642517
TU83233 False 437 lncRNA 0.41 2 3590228 3642517

Neighbor

gene id symbol gene type direction distance location
LOC103044476 NA coding downstream 91218 3467202 ~ 3471553 (-)
grip1 grip1 coding downstream 536904 2673173 ~ 3025867 (-)
tmbim4 tmbim4,LOC107587136,LOC107655596,LOC107567270,LOC107757272,LOC107694279 coding downstream 894273 2661803 ~ 2668498 (-)
lemd3 lemd3,LOC106576661 coding downstream 949957 2600412 ~ 2612814 (-)
msrb3 msrb3,LOC107725596,LOC107757268,LOC107587134 coding downstream 965104 2574909 ~ 2597667 (-)
rint1 rint1,LOC107725664,LOC107733011,LOC107553890,LOC107664862,LOC107695894,LOC107590313 coding upstream 52670 3695187 ~ 3703230 (-)
LOC103030485 NA coding upstream 191815 3834332 ~ 3838502 (-)
LOC103036484 NA coding upstream 213025 3855542 ~ 3865736 (-)
LOC103036181 LOC108438810,LOC108279896 coding upstream 226221 3868738 ~ 3889640 (-)
LOC103029733 LOC108438795 coding upstream 257684 3900201 ~ 3915629 (-)
G61630 NA non-coding downstream 46956 3512201 ~ 3515815 (-)
G61611 NA non-coding downstream 164001 3398558 ~ 3398770 (-)
G61610 NA non-coding downstream 164999 3396720 ~ 3397772 (-)
G61609 NA non-coding downstream 166914 3394778 ~ 3395857 (-)
G61606 NA non-coding downstream 173900 3388633 ~ 3388871 (-)
G61746 NA non-coding upstream 145585 3788102 ~ 3854961 (-)
G61754 NA non-coding upstream 204511 3847028 ~ 3851116 (-)
G61760 NA non-coding upstream 294167 3936684 ~ 3937790 (-)
G61785 NA non-coding upstream 366920 4009437 ~ 4009943 (-)
G61818 NA non-coding upstream 368271 4010788 ~ 4013340 (-)
mdm1 NA other downstream 14069 3529520 ~ 3548702 (-)
G61587 NA other downstream 247532 3314153 ~ 3315239 (-)
LOC103031776 NA other downstream 1028418 2464834 ~ 2534353 (-)
LOC103032312 LOC103032312,LOC108426389 other downstream 1104645 2454547 ~ 2458126 (-)
G61251 mkrn1 other downstream 1568913 1984478 ~ 1993858 (-)
G61676 NA other upstream 8328 3650845 ~ 3658268 (-)
cdpf1 cdpf1,LOC107695897 other upstream 198084 3840601 ~ 3846469 (-)
LOC103039416 cald1a,LOC108425386,LOC107656362,LOC107725991,LOC107658884,LOC107710121 other upstream 692601 4335118 ~ 4426156 (-)
G61942 NA other upstream 979696 4622213 ~ 4622577 (-)
G62377 NA other upstream 2731952 6374469 ~ 6374980 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_028726 rap1b coding NC_007115.7 CM002888.2 18852821 ~ 18939338 (-)
rainbow trout (Oncorhynchus mykiss) G111181 NA non-coding NC_048566.1 CM023220.2 8671272 ~ 8671487 (-)
bowfin (Amia calva) G111448 rap1b,LOC106576640,LOC107695907 non-coding CM030134.1 CM030134.1 14168131 ~ 14214816 (-)