G111448 (rap1b,LOC106576640,LOC107695907)


Basic Information

Item Value
gene id G111448
gene name rap1b,LOC106576640,LOC107695907
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030134.1
NCBI id CM030134.1
chromosome length 29342575
location 14168131 ~ 14214816 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU139577
CCGGACAATAGAATATCACCTAGGATTATCTTCCTATTGTAAACACTTCCCAAGGACAAGGCCCATGCAGGCAATTACTCACATCATCAGTGTCTTTGACTCGCAGGATCTGTTCTCTCAAGTCCTGTAGGTCGTTAAACGTGGACTGTGCTGTTATAGAATATACTAATGCGAAACCCTGGCCGTTCTTCATGTACAGGTCCCTCATTGCTGTGAATTGTTCCGTTCCTGCTGTATCCAGGATTTCAAGCATACATTGCTGTCCATCGACTTCGACTTGCTTCCTGTACGAGTCTTCTATTGTGGGATCATATTTTTCAACAAAAATTCCTTGAACAAACTGTACAGTCAAAGCTGATTTGCCAACACCTCCTGAACCAAGGACTACTAACTTGTATTCACGCATCATGCACTGTTTAGGTAATCAATGTCCACACACAGTTTTCCCTCTCCGTGGCTCCAATCTGtttgcgtctctctctccccgcttgctcgcc

Function

symbol description
rap1b Enables MAP kinase kinase activity. Acts upstream of with a positive effect on hematopoietic stem cell differentiation. Acts upstream of or within chordate embryonic development; convergent extension; and heart development. Located in cell-cell junction. Is expressed in several structures, including brain; cardiovascular system; floor plate; hindbrain neural plate; and mesoderm. Orthologous to human RAP1B (RAP1B, member of RAS oncogene family).

NR:

description
PREDICTED: ras-related protein Rap-1b

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU139577 True 497 lncRNA 0.45 5 14168131 14214816

Neighbor

gene id symbol gene type direction distance location
AMCG00006678 NA coding downstream 13799 14139065 ~ 14154332 (-)
AMCG00006676 NA coding downstream 35044 14130780 ~ 14133087 (-)
AMCG00006675 NA coding downstream 44373 14120438 ~ 14123758 (-)
AMCG00006677 NA coding downstream 65061 14101422 ~ 14103070 (-)
AMCG00006673 NA coding downstream 204281 13957481 ~ 13963850 (-)
AMCG00006681 NA coding upstream 37369 14252185 ~ 14270691 (-)
AMCG00006687 NA coding upstream 150826 14365642 ~ 14366487 (-)
AMCG00006690 LOC103382512 coding upstream 161512 14376328 ~ 14388386 (-)
AMCG00006695 NA coding upstream 371933 14586749 ~ 14632771 (-)
AMCG00006696 NA coding upstream 429791 14644607 ~ 14665799 (-)
G111421 NA non-coding downstream 30385 14136328 ~ 14137746 (-)
G111389 NA non-coding downstream 163990 14003753 ~ 14004141 (-)
G111182 NA non-coding downstream 1208503 12954610 ~ 12959628 (-)
G111158 NA non-coding downstream 1407295 12759571 ~ 12760836 (-)
G110957 NA non-coding downstream 2265963 11899963 ~ 11902168 (-)
G111466 slc35e3,LOC106609860,LOC106576641,LOC107737854,LOC107710682 non-coding upstream 29786 14244602 ~ 14246174 (-)
G111452 NA non-coding upstream 75651 14290467 ~ 14295549 (-)
G111478 NA non-coding upstream 96911 14311727 ~ 14312024 (-)
G111481 NA non-coding upstream 121885 14336701 ~ 14374310 (-)
G111622 NA non-coding upstream 514155 14728971 ~ 14730469 (-)
AMCG00006663 hmga2 other downstream 664903 13455432 ~ 13503228 (-)
AMCG00006641 mrps33,LOC106591474 other downstream 1289475 12876292 ~ 12878656 (-)
AMCG00006625 c4h11orf98,c8h11orf98,cunh11orf98,c19h11orf98 other downstream 2027726 12137182 ~ 12140405 (-)
AMCG00006622 lrp6 other downstream 2037748 12071390 ~ 12130383 (-)
AMCG00006621 borcs5 other downstream 2098471 12049494 ~ 12069660 (-)
G111489 NA other upstream 145412 14360228 ~ 14364422 (-)
G111621 NA other upstream 497201 14712017 ~ 14753970 (-)
G111767 LOC107575789 other upstream 1538005 15752821 ~ 15753235 (-)
AMCG00006719 NA other upstream 1666314 15881130 ~ 15896869 (-)
G112059 NA other upstream 3418075 17632891 ~ 17633445 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_028726 rap1b coding NC_007115.7 CM002888.2 18852821 ~ 18939338 (-)
grasscarp (Ctenopharyngodon idella) G111604 NA non-coding CI01000020 null 603695 ~ 629505 (-)
rainbow trout (Oncorhynchus mykiss) G111179 NA non-coding NC_048566.1 CM023220.2 8670286 ~ 8670607 (-)
mexican tetra (Astyanax mexicanus) G94241 NA unknown NC_035906.1 CM008309.1 29382555 ~ 29383298 (+)
mexican tetra (Astyanax mexicanus) G61670 rap1b,LOC106576640,LOC107695907 non-coding NC_035903.1 CM008306.1 3562771 ~ 3642517 (-)