G111466 (slc35e3,LOC106609860,LOC106576641,LOC107737854,LOC107710682)


Basic Information

Item Value
gene id G111466
gene name slc35e3,LOC106609860,LOC106576641,LOC107737854,LOC107710682
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030134.1
NCBI id CM030134.1
chromosome length 29342575
location 14244602 ~ 14246174 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU139599
aaatattttattgcagagcacacaatatgaaaaagattgtaattgtattaaataacaaccacaaaaaaggCAGTTGCACATTTGGCTCTTTTTGAATGcaatacttctgtttttatatacacaatAGTACCAACATTTCAAACAGTAAAGCTTCAGTTAAGAATATCCTTTGATTATCAGACAAATACTCTATCAGGAAATCTCTCTTCATGGCTTTAAAAAGACGACGCCATCCTTTCCCCGGCTTGTCTTTGTGCACAATCACTTTGTGTTTCAATGTTTATCACCACGGTCAGTTTTTGGCTTCCAGTGTCGGGTGATAATGAACCTCTTTACTCTCCGTTTTATCCCTGTTCAAAGTGTTTCTCGGCCCTGGGAGGTCAGGGTCTCTGGACCAGCTTGCTCTTACCCTCCTCCTGTTCGGTGAGCTTGAAGTGCGTGTAGGACAAGATCCCCAACAGGGTACACACAATCCCTAGGCCTTGGTTGAGCGATAGAGGGTCCTGGAACAGCATGTAGCCCCCCAGCAGGGTAATACAGAACTTAAAGTGACCGAACATGTTGTAGACAGCAGAGGTGTTTCCAATGATCCAGTAAATGGACAAGTTCACCAGAAAGGCAACGACTCCCGACAGCA

Function

symbol description
slc35e3 Predicted to enable antiporter activity and nucleotide-sugar transmembrane transporter activity. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in Golgi apparatus. Orthologous to human SLC35E3 (solute carrier family 35 member E3).

NR:

description
PREDICTED: solute carrier family 35 member E3-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU139599 True 637 lncRNA 0.43 2 14244602 14246174

Neighbor

gene id symbol gene type direction distance location
AMCG00006678 NA coding downstream 90270 14139065 ~ 14154332 (-)
AMCG00006676 NA coding downstream 111515 14130780 ~ 14133087 (-)
AMCG00006675 NA coding downstream 120844 14120438 ~ 14123758 (-)
AMCG00006677 NA coding downstream 141532 14101422 ~ 14103070 (-)
AMCG00006673 NA coding downstream 280752 13957481 ~ 13963850 (-)
AMCG00006681 NA coding upstream 6011 14252185 ~ 14270691 (-)
AMCG00006687 NA coding upstream 119468 14365642 ~ 14366487 (-)
AMCG00006690 LOC103382512 coding upstream 130154 14376328 ~ 14388386 (-)
AMCG00006695 NA coding upstream 340575 14586749 ~ 14632771 (-)
AMCG00006696 NA coding upstream 398433 14644607 ~ 14665799 (-)
G111448 rap1b,LOC106576640,LOC107695907 non-coding downstream 29786 14168131 ~ 14214816 (-)
G111421 NA non-coding downstream 106856 14136328 ~ 14137746 (-)
G111389 NA non-coding downstream 240461 14003753 ~ 14004141 (-)
G111182 NA non-coding downstream 1284974 12954610 ~ 12959628 (-)
G111158 NA non-coding downstream 1483766 12759571 ~ 12760836 (-)
G111452 NA non-coding upstream 44293 14290467 ~ 14295549 (-)
G111478 NA non-coding upstream 65553 14311727 ~ 14312024 (-)
G111481 NA non-coding upstream 90527 14336701 ~ 14374310 (-)
G111622 NA non-coding upstream 482797 14728971 ~ 14730469 (-)
G111626 NA non-coding upstream 486996 14733170 ~ 14734171 (-)
AMCG00006663 hmga2 other downstream 741374 13455432 ~ 13503228 (-)
AMCG00006641 mrps33,LOC106591474 other downstream 1365946 12876292 ~ 12878656 (-)
AMCG00006625 c4h11orf98,c8h11orf98,cunh11orf98,c19h11orf98 other downstream 2104197 12137182 ~ 12140405 (-)
AMCG00006622 lrp6 other downstream 2114219 12071390 ~ 12130383 (-)
AMCG00006621 borcs5 other downstream 2174942 12049494 ~ 12069660 (-)
G111489 NA other upstream 114054 14360228 ~ 14364422 (-)
G111621 NA other upstream 465843 14712017 ~ 14753970 (-)
G111767 LOC107575789 other upstream 1506647 15752821 ~ 15753235 (-)
AMCG00006719 NA other upstream 1634956 15881130 ~ 15896869 (-)
G112059 NA other upstream 3386717 17632891 ~ 17633445 (-)

Expression


Co-expression Network