G108354 (p4hb,LOC107701207,LOC107553316)


Basic Information

Item Value
gene id G108354
gene name p4hb,LOC107701207,LOC107553316
gene type unknown
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035909.1
NCBI id CM008312.1
chromosome length 44161018
location 3071525 ~ 3088727 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU146402
AGTTTGTCAccattttgttgtttatttggcCACCAGTTATCTTTTCCACATCGATCTGAAAATGTGATGGAATGCTTCGTTCTCTGAACAACTTCTCACCTTTCTCTCAAATAcagcttttaataaaaaacaaaacaaaacctcTTACAGAAGTCTTTCCATGTACAAACCCCCATTCCCTTCCCCCATTTACATCACCCCGATATCCACCTTTCTAGAAAAGTAATAACAGCTggggtgaataaaaaaaaaaaaagaaatagaattaaTTCACAACCCTGTCCCTGGACACGTGTAAGAGCAAACGAAAACAAAACGCTGACCAGGTTAGCATGAGCTGCATTATTTTCTCCCTCCCAGACATACTGACCACACAGACAGAACCGCCTCGGTGCAAACCGGACCACCGTAagaatgaaacaaaacaaaaggggATGATGGGCAGAAAAACTTCTCCTGAACATTAATGGAATTGTGGTTTCAGTAACTGATATGAAATCTCTGCTGGCGTCACAAAAGAACAAGAAGTGCTACAGAACTTTGTTTGATATCCTCTGAGACTGAGAGGGCCACATGCCCTTACACAAAAACCCACTCAaataaaaactggaaaaatagaattaaataaaacagctttaacacctttaaaaaacaattcagTAGCCACATATTAAAGGAATGGTCCAGTCCGTAACGCTAACGTCACCAAGGATGAATAAAATCCAGTAGTCGCTAAGGCCTACAAAAACCATGACTACATCAGCAGCTACAGGATTTCTGCCACCTTCAATCAAGTCAGCATGCATGGATGAGCTGTTCCTTTAACAGTTTGAggggaaaaaacagagaaaagaagcACATTAGGACTGTAATAGGGAAAAAATGCAAAGCGGAACAAAAAAGGGAAATTCTCAGCTTGGTCTCAGCTACATCTGCATTTGTATCGCAATGGCCCGCTCTACACAGAATGTATTGACTTGAGCAACCTCCTATTGGGTGTATGGCCCCCAGGGCCCTGAGAAATCAGTCCATTCCAGCCACTGTACACTTGTCCACTCACTCAGGGAGAGAGTTTGTGgaacaataaacaacaaaaaactggCCTTCCCCCCTCACTCTGTACCCTGcgatattaaattaaacaaattaaacagtgAAGCAATACTGATCTCTTGGATCATTACAGAGGTGATGAACCGGCGCAGAAGTCAACTAGGACCCCTCAAACCTCAGCGCTAACACACATCAGGGGTAACACCAGGGGAAACTTTCCAAAAATGACCCAAATGTGTAttcaattttcttttctttgaggTCCAGGGGTAAGAACAGAGTCCAGGCTTGAGACCAGTCAAGTTGCTGTGGCGGTTGGATAGAAGGGCAGATGCCCTAGCAGCTGTGGGGGTTTACTGGGAGAAGCTTGAGGTTTCCTGGGACAGGGAAGGGGTTTTAGAGTggaagtggtggtggtggtgaaggGGTTTTGTCTCTCCTCGTGTCCTCCTCTATCTCTCGCTGTCCTCCGCCTTTATAACTCATCATGCCCTTCATCATCATGACCTTCATCTGAATCATCCTCCACATCATCCAGGTCCAGATCCTACAATAGGAGGAAAAAAGGGAGGTAATATGTATATTACAATCATAGAAAATAAGTTGTGAAGTTGTAGTGTtttagaagtttattaaaatacattattttacatgttACATTTGAACACTTCCATTGATCTGTTGACCAGGGCATTCTTATGCAATGTATACAACTTGTTTAGGAAAGTCAGTAAATGTTATGCAAGTATCAGGGTGTGATGTGGGTCAGCACCAACATTTTCATtggggctgtgtattggcaggAACCTGgggttatgattcaatataCTGAGATATTGTGATCCTACAAGCAGGGTGTTCTTTGcaattgtttaatttaaagttttagaaaaattaaaatcacAGCATAAAGAAAGTGGCTCCGACAGTTTACCTTTTTTCCCCTCCCAGTTTATTGATATcaattagggctgggcgatatgtcGAGTTTAGGAGTTATCAATATTTTCATATGAGATACAAGATGATACAATATTTAAATCGATATGAATTATACTGTGCATTAATTAGCTCAGACAGTTCACCTTCCCTTCTCAGTTTGTTGATACCGATTAGGGCTGGACGATACATATTGAAGTATCGATATATTGGTCATACAATATACGATAAGAATATTGTTTATATCAAAACAGACCAATTAGCTGACAGTTGTCTTTTTCTCCTCAGAGTTTGTTGATCGACATTGCCGACAGATCTTTCTAGAATATATCATGTTCATCTACAgctaaatttaaacaaaattgccTGTGTAAATCTTTGAACATGTGCCTTTTTGTTATTACGTTaatggaagaaaaaaattgagataTGTCATATCGCCCATCACCTTTCAGCTAAAACAAATAGAGATTAGTTTTgacccatatcgcccagccctagagTACAACACATTGTCTAGTGGtaggggtttaaacacaacacaaataaCGTCtaatatttacatgtaaattaattaattaaaaatcaatactgggTTCGACTCCTTTTCAACAAACAAAAGCAACAATACATGGCAACCAATAAACACATGACCATAACTGGAACCCAATTATGAAACTGCTCCAAAAGACCCTCTTTAGAAATGTAAATTTTTAAGAGCTCTAATAACGCTCAAAATTAAGAACaaagaatgtaaataaaatgtatagggAATGAAATGGGCACCCTGACATTAAGCACCATATAAGCCGTGTTGCCAAGGCCTTTTGTCTTCATCACGCAAACTAGCTGGTGTTGAAGGAACTGATGTTGAACTGCTGTCAGTAACTGTGGGCAGTTAGAACTCATCCCTGTGGTGGGGCAGAGGGGTAAACAGCTCCAACAGCTGTGCTAGGCATTAGTGACCGCGGTAAAGCACTGGAATTAGACTTCCTAGAATCGGAACCAGGGGATTGGGATGGGCTTTCTAAGTTTTGGACCTTGTCCAGTCTGGACACTAGACGCGATGCCCAAAGAATTAGAGGAGAGGCATCGCACAATGCTCATTTCTTTTGTACATCAAGGCTTGACCCATTGGAaaagatttttgtaaaaatgtgttgaaTCCGTCAGTAATAGCTGCTGCAGGAACAGGAGACAATCAAACCAACACTGGGGTTTGACTGACTGACAGTGATCTAGCTCAAGTTTAAGTGCAAGCATTTTGATGAATGATGTTAGCGCTCCTAGTTAGCATTCTCGTTTATTTTAAATCTACAACCTGCGAGCTACAAGACGAGTCAGATGCAAGAAGCAGGTGCTCTGGACTTGCATCAGAGCTTGTAAACGAAGCCTCATTGGGGAAACCAGATGCCTTGACTTGGGGTCATGATAATAAACATCAGTTAACCCTTCATCAGTCCCATGACTTACCTGGCGCTCAGGAAgccataaaagaaaaatatccaAAATCCTTTATGCTGAGTAATATTGACACTAGCCCTAAACTGGAATGCATGAAAGTATTAAATTgttgcaaacaataaaaaaagggaGACAGTTTGAAGGTGCAACCAGAACACCTTTGAGATCAGAGGCTGGTGTAAAAGGCATGTGCAGGGACGATAAACTGTAAGAATTAAGTTCTAGATCACTGCACCAACTGCAcatgtaaacaactgtgtatgGCTTTGTTTACAGTTACCAAAATAAAACTCAAATGGTTGAGTCGTATAGAGCCTATAGAAAGTTAAGTAAACACTAAGCTACACCAGTTGTAgctaatataaaatttaaaagccAAAAGTGAGCTGTTAAGATGCTTTAACAAGCACCAAATAACAAAAGGTACTCCAATGAAAAGTCAATCAGAAATCAGCAAGAGTCATTGGCACTTAAAGCCCAATTTATACTCCATGCCATAGCTCATGCAGTGCGGTTATAAGCATTTTAAACAGCAAAGGCGGGAATGTGTGGTCCAACAGGCCATGCGTTACCGTCCAATCACAGATGTCTGTTCGCGACGCATAGTTACATTTCCAAGGAGGTGTGCTTCGAGCTAAAGCGCAAGTTATGCGGCAAATATAACTACAGTTGTCTAGCAGCACTAGAGACGCTGAAAACGATCATTAATTGTAATATCTCATTATTAATGGACCCAGTGCATTTGTATTTTAGCCATACACAAGTTAATAGTGAAAATAAGACAAACTAACTTCtgcttcacatttaaaataaggttCCTGGAACTGTAAAGACCATTCATTTTTCTAGTGTTGTCCAATGAACAGGTAAGAGTTACCCTGGTTATTACACTCACACCTacctcctcatcctcatcctctcCTGCTGGTGCTCCTCCTTCCTTTCCACCACTCTCCAAAAACTTTGTAAAGCCGTCCAACGTCCTCTCCCCACTGTAGTCAATTatCTTGTGCTCCTCCCCAGCAGGGAAGAATTTTAGTGTTGGGAAGCTGTGGACTTTAACAGCCTCGATCTCGTTGGCTGTGGAGTCCATCTTGGCTATCACAACGTCTTTGCTGTCCTTATACTTCTCTCCCAGCTGATCCCAGATAGGAGCCAGCTGTTTACAGTGACCGCACCAGGGGGCATCTGAAAGAAAAGGTGGCATAATCGAAAGaggatttttttgcatttctgaTACAACTGTGTGTACACTGCTCCACACCAAAACATATTTGCTAACTAAGATGTTGAaattattcaaataattaaacagTAACTATTTATGGGAGTGTAAGGAAATCTGAATATGGGTCTTTGCTTTGTCTGGGTTAagttaaatctctctctctctctttgttcaAGAGTGTGCAGCTTCAGAAGCTCAGGGCAAACTCACTAAGGGGGTAACATCCCCAGGCAGTTGGAGAATGACACTTTACTGCTGTATTCTAAACCCAGTACAGTGGAAAGTATGAGGGAACTGGTCTCTGGTCCATCATCAGATGGAACAAATCACTGACCGAGTGTCTATTGAGTGTGTGGCACCAACAGCTGAGCAAATCCACATACAGCTCCAGCCAAGGCCAAATGTACTGGACAGCATAAAAAGCCCTGAGCACGTGCTGTCTGTTAGCATCTCTGCAAATCCCCTCCTCCACAGGGAAATTCCCACTCATAGAGGAGTGGACATTTTTAGAGGAAAGTGCAAGATAACCAGATCCCCCAGCTGCTGGAAACATGTAAAAATAGTCTTGCCAACTCAAACTTAAAACAAAACCTCTATACAACAATGATGTGCTTTTAAACAGGaaacttatttttataaataggtTTTATGAGTATACGTCGTCATAATGCATGTTTGCATGCATGccttattaataaataagttCACTgggaaaaacaggaaaaatccTGAAATCTTACAATCTACAGAATATACAATTTGCTTGCACTGTAATGATACACTTAAATCCATAAACTTatgcttaaataacaaaaaaaaaagtttctcaaTTCAATATTCGGAGCACAATTTGCATAGACAAATGAACACCGTATCCATGCTGTTGCAAGTTGCTGAAAGCGTTCTTACTGAACTTGTTCTGACAAAGCAGCCAATTAAAGCATGATTCATTTAGACTGTGTAAGAATGCATCAAATTTGCAATTTCAAATGTCACTTACAGAACTCAACAAAGACATTCTTGGTGGGGTCAAAGACAACTTCCTCAAAGTTCTTGCCCACCAGGGTCTTGACTGGGGTTTTGTCCCAATCTTCAGGAATGTCCTGGCTCATAAGATGAGGCTTAAGTTTGCCCTCTGTAAAAGCTGTGCAGAAGGTAATGATGTTTTCTGCTGTGATCTCTGACGCCTCTGGCTTGTATTTGGTCATTTCGTCTTCCAGGGTGATGAGTCTCAGGGCGGGGCACTCCTCTTTCTTCAGCCCGAAGAATTCCAGGATGCGCTGGTTATCATCCACATCGCTGTcgatgaagatgaagaggatCTACGGACCAATCATAAGAAAATTAATAACTGAGTGGGTGGTGTTACATCCAAGTGGGTCATTGTTTATAAGCTGCATAAAACTCTCATTGATTATAgttgcataaaaaaaagttgcctCTCTATAATGGAAATCCATTACAGTTTACTCCTCACTCACCTTGCCTTTGAAGCCTTCAGCTGCTTTTCTGAAGTTGTCCATCTTGTCCTGGAAGTCTTTGCTTGCTTTGGGCACAAACAGCAAAATGTGTGACTTGATCTCACCTCCGAAGATTTTGGGGGCCGTCTGCTCAGTGAACTCGATGACCAGGGGCAGCTGGTTGGCCTTGATGAAGCTCAGGAGGCCCTCTTTGCTGAGTTCTCCATCAAAAGTGTTACGGCCCTCGtcaaactTTTTTAAAGAGCACAACGGAGTCTTCGGTGACCTCGAACTTGGAAAAAACAGCATCGTCAGAGCTGATGCCAAATGGAATGTCGTCGACAGCTTCTGCTGCTTTGATAAAGGCCTTGGCACCATCAGACTCAACGTCCTTGAAGAAACCGATGACTGCGACCTCATTGTCTGCAATGAGAGACTCGGCCTGAGTGACCTCTGTGAGAGCAGCGGCTGCTGGTCCTGTCCTCTTCTTCAGCCAGTTCACGATGTCATCAGCCTGCCTtccagCTGAGTACTCTTTGGGGGAGGACTTCTCTCCTCCCTTGAAGAATTTGATGGTGGGATATCCGCGCACGCCAAACTCCTGTGCAAGGTCTGCCTCTTCGGTGGCATCCACTTTGCCCAGGCGGATGTCTGAACCCTCTGCCTTGAGCATTCCTGCAGCTTTGGCATATTCTGGTGCCAGGGCCTTGCAGTGGCCGCACCATGGTGCATC

Function

symbol description
p4hb Predicted to enable protein disulfide isomerase activity. Predicted to be involved in protein folding and response to endoplasmic reticulum stress. Predicted to be located in endoplasmic reticulum lumen. Predicted to be active in endoplasmic reticulum. Human ortholog(s) of this gene implicated in Cole-Carpenter syndrome. Orthologous to several human genes including P4HB (prolyl 4-hydroxylase subunit beta).

NR:

description
succinate dehydrogenase [ubiquinone] flavoprotein subunit, mitochondrial-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU146402 True 6877 TUCP 0.42 7 3071525 3088727

Neighbor

gene id symbol gene type direction distance location
trim25 LOC108272901 coding upstream 217347 2839272 ~ 2854178 (+)
utp6 utp6,LOC107710019 coding upstream 391804 2667611 ~ 2679721 (+)
tefm tefm coding upstream 437520 2626747 ~ 2634005 (+)
LOC111193706 NA coding upstream 484633 2573719 ~ 2586892 (+)
LOC103034191 NA coding upstream 601549 2466737 ~ 2469976 (+)
nptx1 nptx1,LOC107750979,LOC107701212,LOC107553322 coding downstream 340457 3429184 ~ 3439321 (+)
LOC103027401 NA coding downstream 576947 3665674 ~ 3675499 (+)
LOC103027108 NA coding downstream 588492 3677219 ~ 3691402 (+)
LOC111193710 NA coding downstream 605120 3693847 ~ 3711534 (+)
LOC103032370 NA coding downstream 622925 3711652 ~ 3722108 (+)
G108356 NA non-coding upstream 11629 3058099 ~ 3059896 (+)
G108340 NA non-coding upstream 43824 3027335 ~ 3027701 (+)
G108328 NA non-coding upstream 88583 2982253 ~ 2982942 (+)
G108317 NA non-coding upstream 164079 2906890 ~ 2907446 (+)
G108296 dgke,LOC107553311,LOC107710026,LOC107669537,LOC107591925,LOC107701198 non-coding upstream 193328 2876742 ~ 2878197 (+)
LOC103023742 NA non-coding downstream 16236 3104963 ~ 3106436 (+)
G108383 NA non-coding downstream 51179 3139906 ~ 3142465 (+)
G108384 NA non-coding downstream 53909 3142636 ~ 3144776 (+)
G108375 NA non-coding downstream 77301 3166028 ~ 3172270 (+)
G108376 NA non-coding downstream 80528 3169255 ~ 3170575 (+)
anapc11 anapc11,LOC107553313 other upstream 13964 3053906 ~ 3057561 (+)
c13h17orf67 cunh17orf67,LOC103372327,LOC106524488 other upstream 187314 2881034 ~ 2884211 (+)
LOC103039651 znf207a,znf207,LOC105903839,LOC107698690,LOC107724436,LOC108444040 other upstream 503574 2561314 ~ 2567951 (+)
rhbdl3 rhbdl3,LOC107701837,LOC107754871,LOC107718708 other upstream 513264 2509108 ~ 2558261 (+)
G108181 NA other upstream 597445 2473656 ~ 2474080 (+)
LOC111193711 NA other downstream 700075 3788802 ~ 3827165 (+)
LOC111193715 NA other downstream 1219365 4308092 ~ 4357767 (+)
G108773 march7 other downstream 1497600 4586327 ~ 4591793 (+)
wdsub1 wdsub1,LOC108411000,LOC105893302 other downstream 1716502 4805229 ~ 4827718 (+)
LOC103029387 LOC103029387 other downstream 1967811 5056538 ~ 5062119 (+)

Expression


Co-expression Network