G111851


Basic Information

Item Value
gene id G111851
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035909.1
NCBI id CM008312.1
chromosome length 44161018
location 17886357 ~ 17886818 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU151180
tctttaatttttttaataatctttgTATTGCACATAGCCTAGACTACTGGTAATGTAGTGAGAATTTGGTCTCCATATTGCACATACTGTATtgatactgtacataaacagaGAACACCCTCATTAATCCTTAAACTTCTGGATGTACAGACCCTTTCAGCTGTCAACTCCAGCATCGTCAGACGAAGAAAAATACAGGTCCTCCTCCACCTCAACTGCAGCAGTAACTACATACTGCATTAAACATatgtacacacatgcacattctGAATatttggttgtgtgtgtgtgtgtatgtgcttgtGTTAAACCATTCACTAATAATATAAGACACTTAGTAGTTCTACACACTTTATTATCCACTTTCTATTATCCACTGGTCCTTACCacacaggagagaccaccacagagcagctattatttagGTGTTGGGTCATTTCAAGCACTATAGTGACTAGGGTT

Function

NR:

description
PREDICTED: uncharacterized protein LOC104960641

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU151180 True 462 lncRNA 0.38 1 17886357 17886818

Neighbor

gene id symbol gene type direction distance location
LOC103044180 asic4,asic4b,LOC107660096,LOC107555455,LOC107748548,LOC107705515 coding upstream 9637 17741917 ~ 17876720 (+)
LOC107197874 NA coding upstream 209019 17670484 ~ 17677338 (+)
LOC103030670 gmppa,gmppab,LOC107555420,LOC107660139,LOC107566312,LOC107688916 coding upstream 294045 17578639 ~ 17592312 (+)
tp63 tp63,LOC107574491 coding upstream 417768 17380238 ~ 17468589 (+)
LOC103031855 LOC103031855,LOC108272012 coding upstream 574938 17251163 ~ 17311419 (+)
LOC103039018 cdk5r2a,LOC103039018,LOC108437840,LOC108272557,LOC107660098,LOC107566326,LOC107705611,LOC107748545,LOC107566799 coding downstream 71691 17958509 ~ 17960646 (+)
tmem198 tmem198,tmem198b,LOC107566785,LOC107705614,LOC107660101,LOC107566325 coding downstream 143415 18030233 ~ 18078902 (+)
dnpep dnpep,LOC107566786,LOC107596305,LOC107688842 coding downstream 214660 18101478 ~ 18112847 (+)
LOC103043557 ptprn coding downstream 227202 18114020 ~ 18172156 (+)
LOC103045584 NA coding downstream 478569 18365387 ~ 18372154 (+)
G111850 NA non-coding upstream 113 17885844 ~ 17886244 (+)
G111831 NA non-coding upstream 22133 17863782 ~ 17864224 (+)
G111825 NA non-coding upstream 109076 17776130 ~ 17777281 (+)
G111812 NA non-coding upstream 207054 17678976 ~ 17679303 (+)
G111791 NA non-coding upstream 251041 17635109 ~ 17635316 (+)
G111853 NA non-coding downstream 905 17887723 ~ 17888111 (+)
G111856 NA non-coding downstream 1360 17888178 ~ 17889077 (+)
G111866 NA non-coding downstream 52548 17939366 ~ 17939881 (+)
G111880 NA non-coding downstream 100282 17987100 ~ 18028847 (+)
G111907 NA non-coding downstream 268453 18155271 ~ 18155850 (+)
G111719 tbc1d23,LOC107590650,LOC107731832,LOC107752629 other upstream 403547 17471879 ~ 17482810 (+)
LOC103032787 lpp,LOC108427685,LOC108271779,LOC107590653,LOC107684332,LOC107717931,LOC107752632,LOC107696776 other upstream 730683 16776334 ~ 17155674 (+)
G111629 NA other upstream 1222998 16659829 ~ 16663359 (+)
lsm2 lsm2,LSM2,smx5 other upstream 1228880 16652886 ~ 16657477 (+)
bok bok,LOC107733256,LOC107752647,LOC107696759,LOC107694130 other upstream 2344029 15521332 ~ 15542328 (+)
G111857 chpf other downstream 19297 17906115 ~ 17910388 (+)
LOC103038704 LOC108437839 other downstream 45873 17932691 ~ 17947114 (+)
dph3 dph3,LOC108437844,LOC107559917,LOC107660145,LOC107748572,LOC107738311 other downstream 1358427 19245245 ~ 19251811 (+)
erp27 erp27 other downstream 1765850 19652668 ~ 19665542 (+)
LOC111193742 NA other downstream 2278622 20165440 ~ 20170248 (+)

Expression


Co-expression Network