G111629


Basic Information

Item Value
gene id G111629
gene name NA
gene type unknown
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035909.1
NCBI id CM008312.1
chromosome length 44161018
location 16659829 ~ 16663359 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU150878
ACCttactagctaactagcttcagAAACCTCTCCACTATTTACTCTGTTTTACAGGCTAGTTAGAATTAGCCTGCTGAATATCCTTTAACCTTGAAGGTTAAAATTGGGACTGTTCTGGAAAGATGGATGGCGAGCACTGCAGGGACGAGGGTATGGAGTCCAGCAGCGGACATGACTACAGCCTGTCTGAGAGTGAGATGGATGAAGTTTTCTCAGAGGAGCCTGTGATAAACTCATCTGTGACGGACCTGTCGGATGAAGAGATTtcaacaaagaaagaaaaccaCTGGCGCCTCGGCCCTGAGGACCTTAATGATACTCTTGTCTATGATTTCGAGCTGGGACGGTGATGGAAGTGTGTGAAAGTCATTTTTAGGTGTAATTGTTTATATGCATTgtgcacatatata

Function

NR:

description
FH1/FH2 domain-containing protein 3-like, partial

GO: NA

KEGG:

id description
ko03460 Fanconi anemia pathway

RNA

RNA id representative length rna type GC content exon number start site end site
TU150878 True 411 TUCP 0.44 4 16659829 16663359

Neighbor

gene id symbol gene type direction distance location
inpp5d inpp5d coding upstream 7970 16616074 ~ 16651859 (+)
gpr17 gpr17,LOC107717943,LOC107752663,LOC107694121,LOC107590682,LOC107552259 coding upstream 55726 16594994 ~ 16604103 (+)
LOC103031634 LOC108427680,LOC108271983,LOC108271985 coding upstream 68011 16540215 ~ 16591818 (+)
LOC103025807 sap130a,LOC108427679,LOC108271984,LOC107590658,LOC107552246 coding upstream 125113 16515023 ~ 16534716 (+)
amotl2 amotl2 coding upstream 174370 16472566 ~ 16485459 (+)
LOC103031855 LOC103031855,LOC108272012 coding downstream 587804 17251163 ~ 17311419 (+)
tp63 tp63,LOC107574491 coding downstream 716879 17380238 ~ 17468589 (+)
LOC103030670 gmppa,gmppab,LOC107555420,LOC107660139,LOC107566312,LOC107688916 coding downstream 915280 17578639 ~ 17592312 (+)
LOC107197874 NA coding downstream 1007125 17670484 ~ 17677338 (+)
LOC103044180 asic4,asic4b,LOC107660096,LOC107555455,LOC107748548,LOC107705515 coding downstream 1078558 17741917 ~ 17876720 (+)
G111604 NA non-coding upstream 47969 16611638 ~ 16611860 (+)
G111550 NA non-coding upstream 203656 16455729 ~ 16456173 (+)
G111517 NA non-coding upstream 394843 16263830 ~ 16264986 (+)
G111515 NA non-coding upstream 422117 16236720 ~ 16237712 (+)
G111514 NA non-coding upstream 425532 16230896 ~ 16234297 (+)
G111646 NA non-coding downstream 95790 16759149 ~ 16759979 (+)
G111662 NA non-coding downstream 100794 16764153 ~ 16768094 (+)
G111667 NA non-coding downstream 155550 16818909 ~ 16837133 (+)
G111701 NA non-coding downstream 659884 17323243 ~ 17323504 (+)
G111705 NA non-coding downstream 688398 17351757 ~ 17391180 (+)
lsm2 lsm2,LSM2,smx5 other upstream 2352 16652886 ~ 16657477 (+)
bok bok,LOC107733256,LOC107752647,LOC107696759,LOC107694130 other upstream 1117501 15521332 ~ 15542328 (+)
LOC103028474 NA other upstream 1742445 14894109 ~ 14917384 (+)
G111146 hs2st1b,LOC108427652,LOC107593177,LOC107694133,LOC107740348,LOC107679861,LOC107751310 other upstream 1898003 14757393 ~ 14761826 (+)
G110974 lrrc8db,LOC108413222,LOC108272026,LOC107749977,LOC107698886,LOC107730703,LOC107555394,LOC107564626 other upstream 2611899 14034097 ~ 14047930 (+)
LOC103032787 lpp,LOC108427685,LOC108271779,LOC107590653,LOC107684332,LOC107717931,LOC107752632,LOC107696776 other downstream 112975 16776334 ~ 17155674 (+)
G111719 tbc1d23,LOC107590650,LOC107731832,LOC107752629 other downstream 808520 17471879 ~ 17482810 (+)
G111857 chpf other downstream 1242756 17906115 ~ 17910388 (+)
LOC103038704 LOC108437839 other downstream 1269332 17932691 ~ 17947114 (+)
dph3 dph3,LOC108437844,LOC107559917,LOC107660145,LOC107748572,LOC107738311 other downstream 2581886 19245245 ~ 19251811 (+)

Expression


Co-expression Network