gpr17 (gpr17,LOC107717943,LOC107752663,LOC107694121,LOC107590682,LOC107552259)


Basic Information

Item Value
gene id gpr17
gene name gpr17,LOC107717943,LOC107752663,LOC107694121,LOC107590682,LOC107552259
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035909.1
NCBI id CM008312.1
chromosome length 44161018
location 16594994 ~ 16604103 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_015606983.2
AGGCAGTTCCTCAAATCttcacacattccacacacactacacactcctcacacactcaccctgCAGGATAACCCTTTGCTATCACAGCAGCTGCAAACTGACTCACGTCTGCAGCCAGACTGCTCCCACCCTGCACTCCACTCTAAACTACACTCCTCTACACTCCTCCAGTCCTGCTCACACCACAGAGCACCCGACACTGTTATGAAGATGGAGTCATCTCCGACAGTGCTCCCAACCCTGTCGTCCAATCAGTCTATGGATGGCTGCACGCCTGCAGATGGAACAGTGGAGAACCTGCTGTTTGGTGTCTACTACATCATTGTCTTCCTTCTGGCCCTCAACGGGAACAGCCTCGCCCTGTGGATCTTCTCTCGCCAGAGAGGAACGTCATCTCCGGCCAACGTCTTTTTGATGCATCTTGCCGTGGCTGACTTGTCTTACGTTATCATTTTACCACTTCGGGCTACGTATCACTTGACGGGGGGACACTGGCCATTCGGTGAGGTTCCTTGCAGAGTTGCAGGCTTCCTCTTCTACGTCAACATGTACGCAAGTTTGTACTTCCTGGCTTGTGTAGCTGGTGACCGCTACCTTGCTGTGGTTCATGCCGTAAGTTCGCTAAAAGTGCGGCATGCTCGCTTTGCTCACATAGCTAGCTTTGCTCTGTGGGCTCTGGTGATTGTATCTATGGCTCCTCTGCTGGTGACCCAACAGACGACTGAAGTGGATGGATCTACAGTGTGCCTTCAGCTGTATCGTGAAAAAGCCTCTCGTAAGGCGCTGATCTCCCTCGCTGTCGCCTTCACGCCGCCATTTGTCGCCACGCTCTCCTGCTACCTGCTAATCGTGAACAGTCTGCGGAAAGGCTCTCGGCTAGAACCGGCCCTGAAGCTCCGAGCTCTGCGCACTATCGGACTGGTCATGCTCATCTATGTGGTATGTTTTCTACCCTATCATGTAAGTCGGGCCACTTTCATCCTCGGTTATGGTCATCCGGATCTGTCCTGTCAAATAAAGCGAGGGCTAGCACTAGCTAACCGCCTTACATCCTCTCTTACCTGCCTGAATGGAGCGCTGGACCCCCTGGTCTACCTGTTTGGAGCTGAGAAGTTCAAGGGCACCGTCCAAAGACTTCTTTGCAGGGATAAATCAGGGGGGTCTACAGCCACCAGTGGAGAACTTAAGGGGACACATGAGAGCTCTCTCAGTGCTAAGTCAGAGTTCTGAGCAGCAAATATTTTCATCTATCTTTGTGACT

Function

symbol description
gpr17 Predicted to enable G protein-coupled receptor activity. Predicted to be involved in positive regulation of Rho protein signal transduction and positive regulation of cytosolic calcium ion concentration involved in phospholipase C-activating G protein-coupled signaling pathway. Predicted to act upstream of or within G protein-coupled receptor signaling pathway. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be integral component of plasma membrane. Orthologous to human GPR17 (G protein-coupled receptor 17).

NR:

description
uracil nucleotide/cysteinyl leukotriene receptor

GO:

id name namespace
GO:0007186 G protein-coupled receptor signaling pathway biological_process
GO:0016021 integral component of membrane cellular_component
GO:0004930 G protein-coupled receptor activity molecular_function

KEGG:

id description
K08404 GPR17; G protein-coupled receptor 17

RNA

RNA id representative length rna type GC content exon number start site end site
XM_015606983.2 True 1261 mRNA 0.52 2 16594994 16604103

Neighbor

gene id symbol gene type direction distance location
LOC103031634 LOC108427680,LOC108271983,LOC108271985 coding upstream 3176 16540215 ~ 16591818 (+)
LOC103025807 sap130a,LOC108427679,LOC108271984,LOC107590658,LOC107552246 coding upstream 60278 16515023 ~ 16534716 (+)
amotl2 amotl2 coding upstream 109535 16472566 ~ 16485459 (+)
cep63 cep63 coding upstream 193603 16385667 ~ 16401391 (+)
LOC103024680 rab6b,LOC107752652,LOC107552273,LOC106527458,LOC103354239,LOC103151367 coding upstream 252449 16182268 ~ 16342545 (+)
inpp5d inpp5d coding downstream 11971 16616074 ~ 16651859 (+)
LOC103031855 LOC103031855,LOC108272012 coding downstream 647060 17251163 ~ 17311419 (+)
tp63 tp63,LOC107574491 coding downstream 776135 17380238 ~ 17468589 (+)
LOC103030670 gmppa,gmppab,LOC107555420,LOC107660139,LOC107566312,LOC107688916 coding downstream 974536 17578639 ~ 17592312 (+)
LOC107197874 NA coding downstream 1066381 17670484 ~ 17677338 (+)
G111550 NA non-coding upstream 138821 16455729 ~ 16456173 (+)
G111517 NA non-coding upstream 330008 16263830 ~ 16264986 (+)
G111515 NA non-coding upstream 357282 16236720 ~ 16237712 (+)
G111514 NA non-coding upstream 360697 16230896 ~ 16234297 (+)
G111513 NA non-coding upstream 367312 16227086 ~ 16227682 (+)
G111604 NA non-coding downstream 7535 16611638 ~ 16611860 (+)
G111646 NA non-coding downstream 155046 16759149 ~ 16759979 (+)
G111662 NA non-coding downstream 160050 16764153 ~ 16768094 (+)
G111667 NA non-coding downstream 214806 16818909 ~ 16837133 (+)
G111701 NA non-coding downstream 719140 17323243 ~ 17323504 (+)
bok bok,LOC107733256,LOC107752647,LOC107696759,LOC107694130 other upstream 1052666 15521332 ~ 15542328 (+)
LOC103028474 NA other upstream 1677610 14894109 ~ 14917384 (+)
G111146 hs2st1b,LOC108427652,LOC107593177,LOC107694133,LOC107740348,LOC107679861,LOC107751310 other upstream 1833168 14757393 ~ 14761826 (+)
G110974 lrrc8db,LOC108413222,LOC108272026,LOC107749977,LOC107698886,LOC107730703,LOC107555394,LOC107564626 other upstream 2547064 14034097 ~ 14047930 (+)
G110694 LOC108444448 other upstream 3759267 12349120 ~ 12835727 (+)
lsm2 lsm2,LSM2,smx5 other downstream 48783 16652886 ~ 16657477 (+)
G111629 NA other downstream 55726 16659829 ~ 16663359 (+)
LOC103032787 lpp,LOC108427685,LOC108271779,LOC107590653,LOC107684332,LOC107717931,LOC107752632,LOC107696776 other downstream 172231 16776334 ~ 17155674 (+)
G111719 tbc1d23,LOC107590650,LOC107731832,LOC107752629 other downstream 867776 17471879 ~ 17482810 (+)
G111857 chpf other downstream 1302012 17906115 ~ 17910388 (+)

Expression


Co-expression Network