G111515


Basic Information

Item Value
gene id G111515
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035909.1
NCBI id CM008312.1
chromosome length 44161018
location 16236720 ~ 16237712 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU150732
tgttattttgtacatgactgttcctgtatttttttaattatttattttgttatgttgcacactgctgttttaatagtgcacactgctgctaccaaaaaagccactagatggcattacatatatatcttaactaagttatttaaactTGACcgttagtgcctaatgtggtgtattatagatcacttgtatcactttgcatcacttatatcaagcccaccttttgaaataagatattgtaaatttgatgaatcaaaccaatgactgaccatagactaatctaaaactggcataggcctctctgctgtaaaaaaaagaaaaaagaaaatcgagaatcaaattgaatcgtgacccttatagtccctAAAATATGGTACATTATTAGATTGCATTCATAAGTTTATTGGGGAAACTGTACTGTAAATGAAAGAAGGAAGGAGGAGTACAGGTACTGTATGGAATCCTGCTGCACATTAACCAGCAAATGTTGAtcagctggacctgtagatcctgtagctctacactcgtaggttacTGAAGCTGCGTCCAGCTGCTCTCATAAATACTGGAAAACCTTtgttgtgtgt

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU150732 True 584 lncRNA 0.35 2 16236720 16237712

Neighbor

gene id symbol gene type direction distance location
slco2a1 slco2a1 coding upstream 57086 16137758 ~ 16179634 (+)
ryk ryk,LOC107752642,LOC107696766,LOC106574121 coding upstream 112923 16023310 ~ 16123797 (+)
LOC103030676 sned1,LOC107694110,LOC107753672,LOC107696765,LOC107593186 coding upstream 216974 15947809 ~ 16019746 (+)
LOC103030367 LOC108427672 coding upstream 294389 15818990 ~ 15942331 (+)
klhl30 klhl30,LOC107696751,LOC107752665,LOC107753621,LOC107694118 coding upstream 421021 15804311 ~ 15815699 (+)
cep63 cep63 coding downstream 147955 16385667 ~ 16401391 (+)
amotl2 amotl2 coding downstream 234854 16472566 ~ 16485459 (+)
LOC103025807 sap130a,LOC108427679,LOC108271984,LOC107590658,LOC107552246 coding downstream 277311 16515023 ~ 16534716 (+)
LOC103031634 LOC108427680,LOC108271983,LOC108271985 coding downstream 302503 16540215 ~ 16591818 (+)
gpr17 gpr17,LOC107717943,LOC107752663,LOC107694121,LOC107590682,LOC107552259 coding downstream 357282 16594994 ~ 16604103 (+)
G111514 NA non-coding upstream 2423 16230896 ~ 16234297 (+)
G111513 NA non-coding upstream 9038 16227086 ~ 16227682 (+)
G111486 NA non-coding upstream 91474 16144537 ~ 16145246 (+)
G111453 NA non-coding upstream 151104 16084969 ~ 16085616 (+)
G111452 NA non-coding upstream 207076 16029031 ~ 16029644 (+)
G111517 NA non-coding downstream 26118 16263830 ~ 16264986 (+)
G111550 NA non-coding downstream 218017 16455729 ~ 16456173 (+)
G111604 NA non-coding downstream 373926 16611638 ~ 16611860 (+)
G111646 NA non-coding downstream 521437 16759149 ~ 16759979 (+)
G111662 NA non-coding downstream 526441 16764153 ~ 16768094 (+)
bok bok,LOC107733256,LOC107752647,LOC107696759,LOC107694130 other upstream 694392 15521332 ~ 15542328 (+)
LOC103028474 NA other upstream 1319336 14894109 ~ 14917384 (+)
G111146 hs2st1b,LOC108427652,LOC107593177,LOC107694133,LOC107740348,LOC107679861,LOC107751310 other upstream 1474894 14757393 ~ 14761826 (+)
G110974 lrrc8db,LOC108413222,LOC108272026,LOC107749977,LOC107698886,LOC107730703,LOC107555394,LOC107564626 other upstream 2188790 14034097 ~ 14047930 (+)
G110694 LOC108444448 other upstream 3400993 12349120 ~ 12835727 (+)
lsm2 lsm2,LSM2,smx5 other downstream 415174 16652886 ~ 16657477 (+)
G111629 NA other downstream 422117 16659829 ~ 16663359 (+)
LOC103032787 lpp,LOC108427685,LOC108271779,LOC107590653,LOC107684332,LOC107717931,LOC107752632,LOC107696776 other downstream 538622 16776334 ~ 17155674 (+)
G111719 tbc1d23,LOC107590650,LOC107731832,LOC107752629 other downstream 1234167 17471879 ~ 17482810 (+)
G111857 chpf other downstream 1668403 17906115 ~ 17910388 (+)

Expression


Co-expression Network