G111550


Basic Information

Item Value
gene id G111550
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035909.1
NCBI id CM008312.1
chromosome length 44161018
location 16455729 ~ 16456173 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU150774
caaacaaacaaaaggaaaataaacaacaaaaaaaagaaaaataaataagccaGCTGTCCACACGATCCCATCCAGTGACTCACTGACGAGCTGGCTTATTACAGATAACCATTACACCCCATGAGCAGCCTCAGACCATACCAGCGAATTACAGCtaaaaaactttactttattaagATCACTTTAAAATCACTAAAGAACAGCAACTGGCAGTTAATGGCGCTCCAAGCACatCATTAATCCCATACTGCACTGCTAACAATCCCAGCACCCATTATCAGTTACATGCAGTCACCTACAGaccaaaaataatataacaaatacatttgaataCAGCTTATTAAAAGTAT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU150774 True 350 lncRNA 0.37 2 16455729 16456173

Neighbor

gene id symbol gene type direction distance location
cep63 cep63 coding upstream 54338 16385667 ~ 16401391 (+)
LOC103024680 rab6b,LOC107752652,LOC107552273,LOC106527458,LOC103354239,LOC103151367 coding upstream 113184 16182268 ~ 16342545 (+)
slco2a1 slco2a1 coding upstream 276095 16137758 ~ 16179634 (+)
ryk ryk,LOC107752642,LOC107696766,LOC106574121 coding upstream 331932 16023310 ~ 16123797 (+)
LOC103030676 sned1,LOC107694110,LOC107753672,LOC107696765,LOC107593186 coding upstream 435983 15947809 ~ 16019746 (+)
amotl2 amotl2 coding downstream 16393 16472566 ~ 16485459 (+)
LOC103025807 sap130a,LOC108427679,LOC108271984,LOC107590658,LOC107552246 coding downstream 58850 16515023 ~ 16534716 (+)
LOC103031634 LOC108427680,LOC108271983,LOC108271985 coding downstream 84042 16540215 ~ 16591818 (+)
gpr17 gpr17,LOC107717943,LOC107752663,LOC107694121,LOC107590682,LOC107552259 coding downstream 138821 16594994 ~ 16604103 (+)
inpp5d inpp5d coding downstream 159901 16616074 ~ 16651859 (+)
G111517 NA non-coding upstream 190743 16263830 ~ 16264986 (+)
G111515 NA non-coding upstream 218017 16236720 ~ 16237712 (+)
G111514 NA non-coding upstream 221432 16230896 ~ 16234297 (+)
G111513 NA non-coding upstream 228047 16227086 ~ 16227682 (+)
G111486 NA non-coding upstream 310483 16144537 ~ 16145246 (+)
G111604 NA non-coding downstream 155465 16611638 ~ 16611860 (+)
G111646 NA non-coding downstream 302976 16759149 ~ 16759979 (+)
G111662 NA non-coding downstream 307980 16764153 ~ 16768094 (+)
G111667 NA non-coding downstream 362736 16818909 ~ 16837133 (+)
G111701 NA non-coding downstream 867070 17323243 ~ 17323504 (+)
bok bok,LOC107733256,LOC107752647,LOC107696759,LOC107694130 other upstream 913401 15521332 ~ 15542328 (+)
LOC103028474 NA other upstream 1538345 14894109 ~ 14917384 (+)
G111146 hs2st1b,LOC108427652,LOC107593177,LOC107694133,LOC107740348,LOC107679861,LOC107751310 other upstream 1693903 14757393 ~ 14761826 (+)
G110974 lrrc8db,LOC108413222,LOC108272026,LOC107749977,LOC107698886,LOC107730703,LOC107555394,LOC107564626 other upstream 2407799 14034097 ~ 14047930 (+)
G110694 LOC108444448 other upstream 3620002 12349120 ~ 12835727 (+)
lsm2 lsm2,LSM2,smx5 other downstream 196713 16652886 ~ 16657477 (+)
G111629 NA other downstream 203656 16659829 ~ 16663359 (+)
LOC103032787 lpp,LOC108427685,LOC108271779,LOC107590653,LOC107684332,LOC107717931,LOC107752632,LOC107696776 other downstream 320161 16776334 ~ 17155674 (+)
G111719 tbc1d23,LOC107590650,LOC107731832,LOC107752629 other downstream 1015706 17471879 ~ 17482810 (+)
G111857 chpf other downstream 1449942 17906115 ~ 17910388 (+)

Expression


Co-expression Network