G117005


Basic Information

Item Value
gene id G117005
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035909.1
NCBI id CM008312.1
chromosome length 44161018
location 39374933 ~ 39375276 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU158034
AGAAGCCATGAAGCCATGAAGCCATGAAGCCATGAAGCCATGAAGCCATGAAGCCATGAAGCCATGAAGCCATGAAGCCATGAAGCCATGAAGCCATGAAGCCATGAAGCCATGAAGCCATGAAGCCATGAAGCCATGAAGCCATGAAGCCATGAAGCCATGAAGCCATGAAGCCATGAAGCCATGAAGCCATGGAAGCCATGAAGCCATGAAGCCATGAGCCATGAAGCCATAAGCCATGAAGCCATGAAGCCATGAAGCCATGAAGCCATGAAGCCATGAAGCCATGAAGCCATGAAGCCATGAAGCCATGAAGCCATGAAGCCATGAAGCCATGAAGCCAT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU158034 True 344 lncRNA 0.50 1 39374933 39375276

Neighbor

gene id symbol gene type direction distance location
LOC111193786 NA coding downstream 92018 39271790 ~ 39282915 (-)
lnp1 lnp1 coding downstream 349771 39013038 ~ 39025162 (-)
LOC103031712 tmem45a,LOC107685333 coding downstream 363179 39002702 ~ 39011754 (-)
LOC103032030 zgc:110788,LOC108440097,LOC107711028,LOC107673477,LOC107726515,LOC107585211,LOC107580362 coding downstream 374768 38996878 ~ 39000165 (-)
LOC111193785 NA coding downstream 393788 38978736 ~ 38981145 (-)
uhmk1 uhmk1,LOC107692420 coding upstream 1244206 40619482 ~ 40636689 (-)
LOC103034848 NA coding upstream 1380072 40755348 ~ 40777657 (-)
LOC103032504 ap1m3,LOC108441657,LOC107724146,LOC107684323,LOC108271949,LOC107692442,LOC106528254 coding upstream 1849565 41224841 ~ 41249611 (-)
c13h1orf210 NA coding upstream 1875741 41251017 ~ 41260579 (-)
orc1 orc1,LOC107725193,LOC105913168,LOC104957406 coding upstream 1949446 41324722 ~ 41335529 (-)
G117002 NA non-coding downstream 13135 39361470 ~ 39361798 (-)
G116964 NA non-coding downstream 189177 39185515 ~ 39185756 (-)
G116961 NA non-coding downstream 223702 39150828 ~ 39151231 (-)
G116954 opa1,LOC107585173 non-coding downstream 325368 39046347 ~ 39049565 (-)
G116946 NA non-coding downstream 372580 39000643 ~ 39002353 (-)
G117009 NA non-coding upstream 53837 39429113 ~ 39429541 (-)
G117026 NA non-coding upstream 122526 39497802 ~ 39498358 (-)
G117059 NA non-coding upstream 281918 39657194 ~ 39657425 (-)
G117064 NA non-coding upstream 356289 39731565 ~ 39731766 (-)
G117065 NA non-coding upstream 361210 39736486 ~ 39736829 (-)
LOC103028549 NA other downstream 83905 39284217 ~ 39291028 (-)
LOC103032356 LOC108441420,LOC108272184,LOC107582737,LOC107726519 other downstream 411239 38953162 ~ 38963694 (-)
negr1 negr1,LOC107673552,LOC107711106,LOC107726517,LOC107582736,LOC107585169,LOC107685309 other downstream 475487 38630637 ~ 38899446 (-)
G116805 plcxd1,LOC103035541,LOC105895009,LOC107711026,LOC107673474,LOC108441321,LOC107585164 other downstream 990335 38381270 ~ 38384598 (-)
tubgcp5 tubgcp5,chst7,LOC107585157,LOC107582726,LOC107673606,LOC107753407,LOC107582727 other downstream 1126309 38233474 ~ 38248624 (-)
LOC103040080 LOC108440156 other upstream 985043 40360319 ~ 40363960 (-)
LOC103034527 NA other upstream 1356020 40731296 ~ 40769682 (-)
LOC103041916 LOC107758363,LOC107684070,LOC107692412 other upstream 1440857 40816133 ~ 41017814 (-)

Expression


Co-expression Network