LOC111193692


Basic Information

Item Value
gene id LOC111193692
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035909.1
NCBI id CM008312.1
chromosome length 44161018
location 29263551 ~ 29264325 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XR_002650629.1
cattggcttccattgcaagttaagaaggtttatctctgctgtaaagttgtaaagcTGCTTTCATTGGACATTTTGTATTAGCGTTTCTTCCTAAAATCCCAGAGGTGCTCAATCCATCCACATGGGGGCACAATCTGCATTCCTTTAGAAAAGGCTCTTATTTAGGCTCCTTAGCCCCTCTTATTGTACCTGAAGCCCAGCTCAACAGCAGACCAGCAGCTTCTGccttctGCTCCAGTGACCTAGAGAAGACAATGTTTCATCACTTCTTGGTTCATGCTGGTTTTCAGTCCAGCAGATGGCTTCCCAGAGACCAGAGGATGAAGTTTCAGATTGTTCTGTTCATCTTCGTGGTGCTTTGCCTCACACCACAGTTCTACATTCTGACAAGGCAAGTGTGAAAGCATCTATCATTTTGAACTATATGATTAAAGACCTCAGTTATTATCTGGGACAGTAAATAAGTTAAG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_002650629.1 True 470 lncRNA 0.43 3 29263551 29264325

Neighbor

gene id symbol gene type direction distance location
LOC103046288 LOC108427555,LOC108271798,LOC107680717,LOC107667034,LOC107555973 coding downstream 31651 29216336 ~ 29231900 (-)
rbm19 NA coding downstream 50206 29197873 ~ 29213345 (-)
LOC103021438 LOC108431803,LOC107575493 coding downstream 504404 28754098 ~ 28759147 (-)
gli1 gli1,LOC107683616 coding downstream 547365 28653001 ~ 28716186 (-)
LOC103034067 NA coding downstream 617141 28596942 ~ 28646410 (-)
LOC103044340 ptprg,LOC108427534,LOC107592848 coding upstream 27936 29292261 ~ 29457665 (-)
LOC103032473 camk1a,LOC108427562,LOC108271991,LOC107708108,LOC107680695,LOC107713533,LOC107667041 coding upstream 374793 29639118 ~ 29681400 (-)
LOC103042196 kcnb1,LOC107667042,LOC107713536,LOC107680683,LOC108272148,LOC107555957 coding upstream 467422 29731747 ~ 29794085 (-)
LOC103041888 ptgis coding upstream 531443 29795768 ~ 29812725 (-)
tarbp2 tarbp2,LOC107549310,LOC107713493 coding upstream 688349 29952674 ~ 29958425 (-)
LOC111193760 NA non-coding downstream 540 29258144 ~ 29263011 (-)
G114499 NA non-coding downstream 68906 29185618 ~ 29194645 (-)
LOC111193759 NA non-coding downstream 121871 29129428 ~ 29141680 (-)
G114407 NA non-coding downstream 286098 28976832 ~ 28977453 (-)
G114401 NA non-coding downstream 331955 28931350 ~ 28931596 (-)
G114509 NA non-coding upstream 59735 29324060 ~ 29324914 (-)
G114510 NA non-coding upstream 63452 29327777 ~ 29328215 (-)
G114550 NA non-coding upstream 353410 29617735 ~ 29619060 (-)
G114562 LOC108427561 non-coding upstream 418334 29682659 ~ 29685654 (-)
G114565 LOC108427561 non-coding upstream 427133 29691458 ~ 29692869 (-)
ndufa4l2 ndufa4l2,LOC107385343 other downstream 100748 29147436 ~ 29162803 (-)
G114304 NA other downstream 678592 28583393 ~ 28584959 (-)
G114270 NA other downstream 902070 28348265 ~ 28361481 (-)
G114134 kcnq2,LOC107758168,LOC107665991,LOC107558155 other downstream 1133695 28125236 ~ 28129856 (-)
G113888 NA other downstream 2870354 26346140 ~ 26393197 (-)
LOC103044966 tardbp,LOC108427558,LOC107666995,LOC107713527,LOC107555974 other upstream 14491 29278816 ~ 29284782 (-)
G114514 NA other upstream 210521 29474846 ~ 29475567 (-)
G114628 NA other upstream 574934 29839259 ~ 29839768 (-)
LOC111193670 NA other upstream 696059 29960384 ~ 29964703 (-)
LOC103030897 grm4,LOC108427575,LOC108272196,LOC107708172,LOC107549321,LOC107569297,LOC107716363 other upstream 970038 30234363 ~ 30601322 (-)

Expression


Co-expression Network