G121351


Basic Information

Item Value
gene id G121351
gene name NA
gene type unknown
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035910.1
NCBI id CM008313.1
chromosome length 38842236
location 11774904 ~ 11778872 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU163705
TCATCTTCCAGTCCGATTTCATCTCCatagttaaaaacagctgtaccAGGCAGGGTGAGCAGCATCAGCTGGCTCAGCTTCACATGTGCCGCCTTGACTATGGAAGCCAAGTGACCCCTGACACGATCACCAATGTTCCAGATCAGATTGTTTCCTTGCACAGAGTATAATTGCTCCACAGCCTGCACAGTCTCCAGTCCAGGCTCAGGTTTTAGGACCCGTGAAAGGAGCAAATTCACACCAGTCTTGTTCATGAGTCGCTTTACATCATCAACAGATGTTGACTCGGTAACTCCTATTAgaaccctttttcttctcttcctgCGTGTGATTTTTGACAGTTTCTCTCATGCCAGTCCAAAAGGAGTCCAAAGTGTCAATACGATCAATGCCATGAAGGAGAATTCCATCCACGCCTTTACTCAGCCAATAATTAGTGGCAGACGTGACTTTATCTGCGACATGAGTAGAATTACTATTGAACCAAAGGTTTGATCCGCTATAGTTAGGGGTCAGGTCCAAGACCACAGACAACTTTTCTTGTGCGCATCATCGAGAAGCTTAGACAGCTGCTCCATGTTTCCAGCAGTAGAGCTGATCTCCTCCAAATTCAGGTCTTCAGGCTTATCTGGACTTGAGGCGTGGATAGGGCCTATAACCAGACCCTTCACCTTCAGTTTGTTAGCATAATCAAGTTTCTTCGCCAAACTTGCAATGTTAGATTCACCAGTGAAGGACATAATATCTCCAATCTGGTACAGGGGACCCTCATCCCACCAGTTCATCTCAGGCAGGGGTTTGCATCGGGGCGCCTGAACAATGATGACGATGGCACCGGCCAGCATCCCAATCCAGCCGAGCCAGAACGAAATGAGGAGTGCCCATCTAACCTTAATCCacCCTGGAGTTCCAGCAACTCTCAGAAGCTCTTCTTTGGACAGGCCAGTAAACTTGGCTTCTTTCTCTTCAGGAATTTTCACCTTCACACTGCCATTTTTCTCCGTGACAGGGGAGCTGGCGTCGCCATTTCCAGTTTCTCCTCCTGTCATGGGCTGCTTCTCTGGATCCACCTCGTTAAGCTCCACGTCCTTCATGTCCACTTCAGCGTCTTGGGTCATCTTGGCTGATTCTGCGAGCTACGGTTCCACTTCTTTCACTTCCACCTTAAACAGAAAACGAAGAGCGTTAAAAAATCAAGTCCTGTTTTCTAGGATTTGTTCTAGTATtgtgtctcgtgtctctgtatCTGTTCCTCAGGGTGATGCTGAGTCTTT

Function

GO:

id name namespace
GO:0006304 DNA modification biological_process
GO:0044728 DNA methylation or demethylation biological_process
GO:0097159 organic cyclic compound binding molecular_function
GO:1901363 heterocyclic compound binding molecular_function

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU163705 True 1274 TUCP 0.47 7 11774904 11778872

Neighbor

gene id symbol gene type direction distance location
LOC103024948 NA coding downstream 23119 11741279 ~ 11751785 (-)
LOC103026606 nxf1,LOC108278769,LOC107669360,LOC107715364,LOC107559416 coding downstream 55044 11708184 ~ 11719860 (-)
LOC103028746 NA coding downstream 162186 11606619 ~ 11612718 (-)
LOC103029060 NA coding downstream 186037 11585916 ~ 11588867 (-)
LOC103029369 pfdn2,LOC103029369,LOC108439788 coding downstream 190091 11581759 ~ 11584813 (-)
LOC107197275 NA coding upstream 50224 11829096 ~ 11858919 (-)
LOC103037906 NA coding upstream 96116 11874988 ~ 11916264 (-)
LOC111193819 NA coding upstream 237942 12016814 ~ 12024568 (-)
LOC111193840 NA coding upstream 246827 12025699 ~ 12036541 (-)
LOC103031789 NA coding upstream 338238 12117110 ~ 12162942 (-)
G121344 NA non-coding downstream 43744 11729238 ~ 11731160 (-)
LOC111193891 NA non-coding downstream 73113 11699929 ~ 11701791 (-)
G121330 NA non-coding downstream 96316 11678112 ~ 11678588 (-)
G121328 NA non-coding downstream 103856 11667113 ~ 11671048 (-)
G121318 NA non-coding downstream 148105 11623342 ~ 11626799 (-)
G121343 calm1,LOC107670363,LOC105896953,LOC102778633,LOC102293206,LOC107396020 non-coding upstream 4536 11783408 ~ 11787881 (-)
G121353 NA non-coding upstream 10323 11789195 ~ 11797767 (-)
LOC107197290 NA non-coding upstream 61756 11840628 ~ 11841293 (-)
G121369 NA non-coding upstream 111090 11889962 ~ 11896449 (-)
LOC111193894 NA non-coding upstream 130102 11908974 ~ 11909844 (-)
LOC111193892 banf1,LOC105010953,LOC108439777,LOC105907417,LOC105019098 other downstream 9816 11761126 ~ 11765088 (-)
G121209 NA other downstream 409417 11363377 ~ 11365487 (-)
LOC111193818 NA other downstream 411598 11362860 ~ 11363306 (-)
LOC111193889 NA other downstream 412356 11357513 ~ 11362548 (-)
G121084 mat2b,LOC107756808,LOC107590055 other downstream 1075105 10698000 ~ 10699799 (-)
G121377 NA other upstream 162922 11941794 ~ 11966777 (-)
LOC107197484 NA other upstream 204542 11983414 ~ 12012377 (-)
G121381 NA other upstream 243737 12022609 ~ 12031011 (-)
LOC103031472 fam69b,LOC107720916,LOC107585388,LOC107661609,LOC107675805,LOC107752932 other upstream 283417 12062289 ~ 12080374 (-)
s100z s100z other upstream 679436 12458308 ~ 12638596 (-)

Expression


Co-expression Network