LOC111193894


Basic Information

Item Value
gene id LOC111193894
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035910.1
NCBI id CM008313.1
chromosome length 38842236
location 11908974 ~ 11909844 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XR_002650779.1
ACCAATATTCTTTTTGCAGGCTGAATAAAAGCAGTATTACAGAGGAAGGCTGTGCTGCTCTATCATCAGCTCTTTGTTTAAATTCTTCTCACCTGATTGAGCTGGATCTCAGTGACAATATACTCAGAAACTCTGGAGTTATGAAGCTTTGTGAACTACTGGGCAATCAATTTTGCAAACTGCAGATACTTGGAATTGCAGACTGTTGTATAAAAGAGGAAGGATATGTTGCTCTGGCTTCAGTATTGAAATCAAACTCCACGTCAACCCTGACTGAGCTGGATCTTAGAGGGAAtgatcctggagatacaggAGTGCAGCTGCTCTTTGACttagaaacaaaccaaaacagtAAACTGAAAACACTGAGacTGTTGaaaactgctgctgcagaaAAAGCCTATGCTGCCCTTACTAAAGAACTAGGAACCAATCCTTTACTGCTGAAAGAGATGGATCTGAAAGGGAAAATACGAGAAGATTCAGGACTGAAGCAGCTTTCTCATTTACTGAAGGACCAACACTGCAGAACTAAGATAC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_002650779.1 True 540 lncRNA 0.41 3 11908974 11909844

Neighbor

gene id symbol gene type direction distance location
LOC107197275 NA coding downstream 50055 11829096 ~ 11858919 (-)
LOC103024948 NA coding downstream 157189 11741279 ~ 11751785 (-)
LOC103026606 nxf1,LOC108278769,LOC107669360,LOC107715364,LOC107559416 coding downstream 189114 11708184 ~ 11719860 (-)
LOC103028746 NA coding downstream 296256 11606619 ~ 11612718 (-)
LOC103029060 NA coding downstream 320107 11585916 ~ 11588867 (-)
LOC111193819 NA coding upstream 106970 12016814 ~ 12024568 (-)
LOC111193840 NA coding upstream 115855 12025699 ~ 12036541 (-)
LOC103031789 NA coding upstream 207266 12117110 ~ 12162942 (-)
pde8b pde8b,LOC107662428,LOC107701941 coding upstream 507174 12417018 ~ 12494724 (-)
aggf1 aggf1 coding upstream 587219 12497063 ~ 12516548 (-)
G121369 NA non-coding downstream 12525 11889962 ~ 11896449 (-)
LOC107197290 NA non-coding downstream 67681 11840628 ~ 11841293 (-)
G121353 NA non-coding downstream 111207 11789195 ~ 11797767 (-)
G121343 calm1,LOC107670363,LOC105896953,LOC102778633,LOC102293206,LOC107396020 non-coding downstream 121093 11783408 ~ 11787881 (-)
G121344 NA non-coding downstream 177814 11729238 ~ 11731160 (-)
G121412 NA non-coding upstream 146399 12056243 ~ 12059146 (-)
G121414 NA non-coding upstream 150881 12060725 ~ 12061533 (-)
G121420 NA non-coding upstream 203775 12113619 ~ 12115370 (-)
G121490 NA non-coding upstream 439316 12349160 ~ 12414902 (-)
G121492 NA non-coding upstream 443688 12353532 ~ 12368535 (-)
G121351 NA other downstream 130102 11774904 ~ 11778872 (-)
LOC111193892 banf1,LOC105010953,LOC108439777,LOC105907417,LOC105019098 other downstream 143886 11761126 ~ 11765088 (-)
G121209 NA other downstream 543487 11363377 ~ 11365487 (-)
LOC111193818 NA other downstream 545668 11362860 ~ 11363306 (-)
LOC111193889 NA other downstream 546426 11357513 ~ 11362548 (-)
G121377 NA other upstream 31950 11941794 ~ 11966777 (-)
LOC107197484 NA other upstream 73570 11983414 ~ 12012377 (-)
G121381 NA other upstream 112765 12022609 ~ 12031011 (-)
LOC103031472 fam69b,LOC107720916,LOC107585388,LOC107661609,LOC107675805,LOC107752932 other upstream 152445 12062289 ~ 12080374 (-)
s100z s100z other upstream 548464 12458308 ~ 12638596 (-)

Expression


Co-expression Network