G125351 (fpgs,LOC107675685,LOC107585466)


Basic Information

Item Value
gene id G125351
gene name fpgs,LOC107675685,LOC107585466
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035910.1
NCBI id CM008313.1
chromosome length 38842236
location 27369924 ~ 27374609 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU169291
taaatttacaACTATTTTTAACTCTAGACTTAAGTCGGGCTGcacaataaataattagtaataatGTAACACAAAGGTGCCCAATCCGCTAATGTTGCCaatgtggctgcaggttttcactTTAACTGACTTAAGAGCACAGCATTAGGTGCCATttttgttcagactgcaggcaaaaCTGATCTGATCAAAATCAGATCTAATGAGCTGACTATCCACACTTATTTGTAAGTGATCAGACTGGATTTGTGTGATAGGACATCACAAATGTAgctttattatattgtaatcgCATTGTAAACCACCTCCAAATGTAGCAAAATTCTAATGAAAATTTCGTTTTCTAGTCAAAAATCCATCTCAATACAATCTAGATTTGGAAtagcagtctgaacatagccttagTGTTGAGATGATCTAAAATGAAAATTTGGAGCCACACCTGATTTTTCTGGATAGTTTTTCTGAAAAATGTCAGCTTCTTTAGACAATCACATGatccaacaaataaataattatggtgaaattaaataaatggtttAATGCAAGGAACTACATATTGCAATCACAATATGTAGAAATGGCACACGTATAGCAACATATTCTGTCCATATTCTGCTTTCTAATCCAGAATCGGTGCCTGAAAAGCCAGCCTCCAGGGTTTATTATAAGCTTAAGGTCCACAAGCGGTAAACAAGATAATTAATCTTAGATTCCTTAATTAATACTGAGCACCAAGAGCTTGTATCCTGGACAGATTAAGATTAGTCCTGCACTGCTTAGGCTATTTGGGCTTTTAACAGAACCAGGCTTAATCTGTGCCTAGGTCATACGCTCTGTGAACATGTTCCACTGAAGAACAGCATAGCTGTCGGTCTTGCACGAGAAGGCACAAGTGAAGGCTAAGTGCTTGAATGTCCTGTATGAGTGTTTGCCACAAGGTGGCAGTTTGATGGCAGATCAGctgaataattataataaagttatagtaaagattttttttacagcagactTGTTGTGCAAGGCACAGTGAGTTTCTACTGGGTTTGAATTTAGCACAGAAAGATTAAGCCAAAAGTGTTGACTGTCCAAAAGAGACGTCTATATTTGTCTCTTGTTATTGGACAGAATAGACTTTTGCTTAACGTACTTGGCTTATGAAGAAATGCAGCTTTGCAAAATGTATCCCCTTGGACTCCTTAGTGATCTAATATTCACCCAACCACACTATTGACTCTAATGTGTTAGGATGCTAGAGCAGGTTCAAGGTGTTTCAAAGCCCCTCCCACCAAGTGTAAGCTTCCAGTGATCAGCACATGAATATTAGCGACCTCTCTCAGTGGCACAGCTTTAGCACTGACACTAGCTTTCACAGGTATGAGTTGCTTGCTGGGGTCACAAAGCACTGGGTCTCTTCCCTGTGTGATCCACCGGAGGGCGCTCAAGATGCAGGGAAACACCAGTGTCGCACATCGCTGCTCCGCCACCAGTGGGAGGCCACCACCAATCAGAAGCTCTGCCTCCGGCTTCTCCTCCTGACCGTTTAGGACACGCCAGCTCTGCTGGTTGTCCAGACAACGGGTGAGCATGTTCTCCACAGAGACGTTAAAGTTCTGCTGATC

Function

symbol description
fpgs Predicted to enable tetrahydrofolylpolyglutamate synthase activity. Predicted to be involved in tetrahydrofolylpolyglutamate biosynthetic process. Predicted to act upstream of or within biosynthetic process and one-carbon metabolic process. Predicted to be active in cytosol and mitochondrion. Is expressed in several structures, including alar plate midbrain region; liver; nervous system; optic vesicle; and yolk syncytial layer. Orthologous to human FPGS (folylpolyglutamate synthase).

NR:

description
folylpolyglutamate synthase, mitochondrial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU169291 True 1622 lncRNA 0.41 3 27369924 27374609

Neighbor

gene id symbol gene type direction distance location
LOC103043856 slc4a4b,LOC108411430,LOC107720909,LOC107661601,LOC107675739 coding upstream 8340 27286524 ~ 27361584 (+)
LOC103043253 dck,LOC103043253,LOC107720908,LOC107585435,LOC102787471 coding upstream 91212 27272429 ~ 27278712 (+)
LOC103043555 mob1bb,LOC108439533,LOC103043555,LOC107584591,LOC105911503,LOC102220180 coding upstream 98912 27244760 ~ 27271012 (+)
rexo4 NA coding upstream 138338 27223678 ~ 27231586 (+)
LOC103042105 prodha,LOC108439536,LOC107661597,LOC106564257 coding upstream 148247 27200415 ~ 27221677 (+)
cdk9 cdk9,LOC107752941 coding downstream 27541 27402150 ~ 27408332 (+)
LOC103046602 LOC562049,LOC107752939 coding downstream 56631 27431240 ~ 27546558 (+)
LOC103027631 NA coding downstream 238833 27613442 ~ 27616312 (+)
LOC103026552 col5a1,LOC108415203,LOC107675758,LOC107720871,LOC106568813,LOC107752937,LOC106562962 coding downstream 888905 28263514 ~ 28406805 (+)
LOC103026836 olfm1,olfm1b,LOC103026836,LOC107752936,LOC107675788,LOC107720914,LOC107585389,LOC107661607 coding downstream 1114559 28489168 ~ 28550815 (+)
G125145 rpl35,LOC107675720,LOC107584597,LOC107585395 non-coding upstream 177220 27189188 ~ 27192704 (+)
G125134 NA non-coding upstream 306493 27063198 ~ 27063431 (+)
G125100 NA non-coding upstream 431433 26938283 ~ 26938491 (+)
G125099 NA non-coding upstream 436166 26933129 ~ 26933758 (+)
G125097 NA non-coding upstream 443983 26924837 ~ 26925941 (+)
G125354 fpgs,LOC107720889 non-coding downstream 4982 27379591 ~ 27382591 (+)
G125370 NA non-coding downstream 50291 27424900 ~ 27427321 (+)
G125384 NA non-coding downstream 79501 27454110 ~ 27457902 (+)
G125387 NA non-coding downstream 117520 27492129 ~ 27493330 (+)
LOC111193832 NA non-coding downstream 209017 27583626 ~ 27589062 (+)
LOC103041801 NA other upstream 174169 27193714 ~ 27195755 (+)
G125130 ccni other upstream 251932 27059833 ~ 27117992 (+)
LOC103030814 NA other upstream 1311686 26049491 ~ 26058238 (+)
G124810 NA other upstream 1391049 25950758 ~ 25978875 (+)
G124573 ddt other upstream 1935039 25431743 ~ 25434885 (+)
LOC111193934 NA other downstream 16283 27390892 ~ 27395962 (+)
LOC111193935 NA other downstream 192604 27567213 ~ 27576741 (+)
G125538 NA other downstream 329064 27703673 ~ 27704931 (+)
LOC103039679 NA other downstream 1520462 28895071 ~ 28902014 (+)
G125669 NA other downstream 1544247 28918856 ~ 28921588 (+)

Expression


Co-expression Network