G125130 (ccni)


Basic Information

Item Value
gene id G125130
gene name ccni
gene type unknown
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035910.1
NCBI id CM008313.1
chromosome length 38842236
location 27059833 ~ 27117992 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU168955
cgcgcacacacacacacacacacacataaaaacacgcacacacacacacacacacacaaacacacacacacttcaataaACAATGAAGAAGCCATGAAGTGAAAAAGATCAAACAATTTAAAAGAGGAAGAGCGAGAAgtggaaaaaaagagggaagaCAAATCAGTcataaattaagttatattacatctgacaaaacaaaaaattaatctCCATTAATTCTAATATTTATCTTTAAACCCTGGTGTATTTTTTCACAGGTAGCAAAGTCGTTACATTCAGGAGTGCTGTGCGCTTTGTTAGAGACAAAAAGGGggagaaaaaaattagaataagaataaaatttgATTATTAGTTTTGCAAACAGATATATCTGCCAGACAAACTTTAACACTGATATATAAAGGCAGAAATGTGACCACAAGTGGGACGGGGGACGGAGGGAGTATTCCTACTTTTTTTGTGGagatttttcctttattttgatttttttgcttttaaataactttttttagtatttaaagtAATCAGGCTTAAGGTGGTTATGAATTATGAACTGCAGCATATAAAGTATACAGGCTCTAGATATATATGCAAGTTAGGGCTCTGTTGTTCTCTGAAGGTAGGAGGAAAGCACCACACACGACTGCGGTTTTAGCCTTGTCGCCCCTGCAGGCCTCTGCATGTGGTGTTACGACGCTGTGACCGGCTGGAGGGCCGGACAGGGCGAGGATCCTCCCTCCTGGGGGCTGTCCTCATTGTAGAGCCGCTTGATGCCATCGAAGTACTCGTCCACGTCCATCTGCTCCACTTTGCGCTTGGCCGAAGGCTTCCTCCGGAGCGGCAATGAAGCAAAGGACCGGGCTGCGGCATCGTCAGAGGTCAGACTGGGGTCACAGGGCAGGCTCTGGTCCCTGTGAGAGCTGCCAGGTAGCGGAGGTGGTGGCGTCAGGGCAACCGGGAGGTGCCAGGGGGGCAAACCCCGGCTGCCCCAAGGCTCAGAGGGAGGGGGGCGCAGAGGGTGGCAGATGTATACAGTGTTGGGAGGCAGGGAGGCCGAGTGTGTGGACAGGCAGCGTGCAACCAGCTCTctgcagccaatcagctgcAAGCTGTCGAt

Function

symbol description
ccni Predicted to enable cyclin-dependent protein serine/threonine kinase regulator activity. Predicted to be involved in mitotic cell cycle phase transition and regulation of cyclin-dependent protein serine/threonine kinase activity. Predicted to act upstream of or within regulation of cell cycle. Predicted to be part of cyclin-dependent protein kinase holoenzyme complex. Predicted to be active in cytoplasm and nucleus. Orthologous to human CCNI (cyclin I).

NR:

description
cyclin-I

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU168955 True 1120 TUCP 0.47 2 27059833 27117992

Neighbor

gene id symbol gene type direction distance location
stbd1 NA coding upstream 61988 26993313 ~ 26997845 (+)
LOC103039531 LOC103039531,LOC108439545 coding upstream 235040 26816537 ~ 26824793 (+)
LOC103044552 col27a1a,LOC108439562,LOC108279101,LOC107585625,LOC107737153,LOC107705943,LOC107675693,LOC107584663 coding upstream 288160 26679073 ~ 26771673 (+)
LOC111193926 loxhd1,LOC107599385,LOC107705957,LOC107661623 coding upstream 446362 26591866 ~ 26613471 (+)
LOC103044265 loxhd1,LOC107737181,LOC107675695 coding upstream 467489 26561481 ~ 26592344 (+)
ccng2 ccng2,LOC107720902,LOC107661592,LOC107675753,LOC107584590 coding downstream 19844 27137836 ~ 27143258 (+)
LOC103041500 wdr38 coding downstream 61397 27179389 ~ 27188203 (+)
LOC103042105 prodha,LOC108439536,LOC107661597,LOC106564257 coding downstream 82423 27200415 ~ 27221677 (+)
rexo4 NA coding downstream 105686 27223678 ~ 27231586 (+)
LOC103043555 mob1bb,LOC108439533,LOC103043555,LOC107584591,LOC105911503,LOC102220180 coding downstream 126768 27244760 ~ 27271012 (+)
G125100 NA non-coding upstream 121342 26938283 ~ 26938491 (+)
G125099 NA non-coding upstream 126075 26933129 ~ 26933758 (+)
G125097 NA non-coding upstream 133892 26924837 ~ 26925941 (+)
G125091 NA non-coding upstream 161728 26897520 ~ 26898105 (+)
LOC111193931 NA non-coding upstream 180171 26867532 ~ 26879662 (+)
G125145 rpl35,LOC107675720,LOC107584597,LOC107585395 non-coding downstream 71196 27189188 ~ 27192704 (+)
G125348 NA non-coding downstream 248024 27366016 ~ 27399651 (+)
G125351 fpgs,LOC107675685,LOC107585466 non-coding downstream 251932 27369924 ~ 27374609 (+)
G125354 fpgs,LOC107720889 non-coding downstream 261599 27379591 ~ 27382591 (+)
G125370 NA non-coding downstream 306908 27424900 ~ 27427321 (+)
LOC103030814 NA other upstream 1001595 26049491 ~ 26058238 (+)
G124810 NA other upstream 1080958 25950758 ~ 25978875 (+)
G124573 ddt other upstream 1624948 25431743 ~ 25434885 (+)
LOC103046504 LOC103046504,LOC108410666,LOC105005873,LOC107692298,LOC107736894,LOC107578622,LOC105896593,LOC107737864,LOC108279179 other upstream 2056456 24992462 ~ 25003377 (+)
G124391 NA other upstream 2136193 24923211 ~ 24923640 (+)
LOC103041801 NA other downstream 75722 27193714 ~ 27195755 (+)
LOC111193934 NA other downstream 272900 27390892 ~ 27395962 (+)
LOC111193935 NA other downstream 449221 27567213 ~ 27576741 (+)
G125538 NA other downstream 585681 27703673 ~ 27704931 (+)
LOC103039679 NA other downstream 1777079 28895071 ~ 28902014 (+)

Expression


Co-expression Network