G125348


Basic Information

Item Value
gene id G125348
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035910.1
NCBI id CM008313.1
chromosome length 38842236
location 27366016 ~ 27399651 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU169287
aaaaaaaaaaaaaatattttgttgttCATGGGGTTCTTGTTGGGTTTGTGGggtcgccgggacggctgacccttaaggggggggctatgtggcgtctgtgtgtgtgtgtgtgccagcttttagtgtgcctgtgggggcggggtatggtaatccggggccagcggggcattatgggggtatgttttgggtgggttaaggggacctaccatctttgtgttggatagctgggttggtggcctcagGGCTGTTTGAGCTGTGGTGG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU169287 True 262 lncRNA 0.54 2 27366016 27399651

Neighbor

gene id symbol gene type direction distance location
LOC103043856 slc4a4b,LOC108411430,LOC107720909,LOC107661601,LOC107675739 coding upstream 4432 27286524 ~ 27361584 (+)
LOC103043253 dck,LOC103043253,LOC107720908,LOC107585435,LOC102787471 coding upstream 87304 27272429 ~ 27278712 (+)
LOC103043555 mob1bb,LOC108439533,LOC103043555,LOC107584591,LOC105911503,LOC102220180 coding upstream 95004 27244760 ~ 27271012 (+)
rexo4 NA coding upstream 134430 27223678 ~ 27231586 (+)
LOC103042105 prodha,LOC108439536,LOC107661597,LOC106564257 coding upstream 144339 27200415 ~ 27221677 (+)
cdk9 cdk9,LOC107752941 coding downstream 2499 27402150 ~ 27408332 (+)
LOC103046602 LOC562049,LOC107752939 coding downstream 31589 27431240 ~ 27546558 (+)
LOC103027631 NA coding downstream 213791 27613442 ~ 27616312 (+)
LOC103026552 col5a1,LOC108415203,LOC107675758,LOC107720871,LOC106568813,LOC107752937,LOC106562962 coding downstream 863863 28263514 ~ 28406805 (+)
LOC103026836 olfm1,olfm1b,LOC103026836,LOC107752936,LOC107675788,LOC107720914,LOC107585389,LOC107661607 coding downstream 1089517 28489168 ~ 28550815 (+)
G125145 rpl35,LOC107675720,LOC107584597,LOC107585395 non-coding upstream 173312 27189188 ~ 27192704 (+)
G125134 NA non-coding upstream 302585 27063198 ~ 27063431 (+)
G125100 NA non-coding upstream 427525 26938283 ~ 26938491 (+)
G125099 NA non-coding upstream 432258 26933129 ~ 26933758 (+)
G125097 NA non-coding upstream 440075 26924837 ~ 26925941 (+)
G125370 NA non-coding downstream 25249 27424900 ~ 27427321 (+)
G125384 NA non-coding downstream 54459 27454110 ~ 27457902 (+)
G125387 NA non-coding downstream 92478 27492129 ~ 27493330 (+)
LOC111193832 NA non-coding downstream 183975 27583626 ~ 27589062 (+)
G125405 NA non-coding downstream 201578 27601229 ~ 27606844 (+)
LOC103041801 NA other upstream 170261 27193714 ~ 27195755 (+)
G125130 ccni other upstream 248024 27059833 ~ 27117992 (+)
LOC103030814 NA other upstream 1307778 26049491 ~ 26058238 (+)
G124810 NA other upstream 1387141 25950758 ~ 25978875 (+)
G124573 ddt other upstream 1931131 25431743 ~ 25434885 (+)
LOC111193935 NA other downstream 167562 27567213 ~ 27576741 (+)
G125538 NA other downstream 304022 27703673 ~ 27704931 (+)
LOC103039679 NA other downstream 1495420 28895071 ~ 28902014 (+)
G125669 NA other downstream 1519205 28918856 ~ 28921588 (+)
G125687 fnip1 other downstream 1584517 28984168 ~ 28985881 (+)

Expression


Co-expression Network