G125687 (fnip1)


Basic Information

Item Value
gene id G125687
gene name fnip1
gene type unknown
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035910.1
NCBI id CM008313.1
chromosome length 38842236
location 28984168 ~ 28985881 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU169740
GAACAGCATGAGACAAATCAGACACAAGGCTCTGCCTCAGCTTGTCATCATTGGGTATCCCGTGCAGAACAAAATCAGGGACATAAGTAGGACAGTACCCACCAAACAAGGACCTACCAAAGTTGGCTATACTTGGTTTTGAGTAATTTTCCACTAGCTTTGccCCAGGAAAAGGCACCTCCAGCTCATCCTGCCATTCTGCTAGCTCCTCGCTAAAGAACTGTTCATCTTGTTCTTGCCGGGGCAGCTCCTGCCCTGCGTCCTCACTCTCGCTGTCTCCCAAAGCACTGTCCGAGCTCTCGTTTCGGGGAATCTCCCAGTCATTTAAAGGGGGCACCTTCTTTTGTTCCCCTATGTCCCTTTGGGATGGTACGCTTAACGAAATCCCAATGCTTTTGTCCTGCTCAGCAAAATAGCAAGATGTATAGCCCCCTATGGTGGTGGTGCTGCTTGTGCTACACTTACACTGGCCCCCCTCCCTTTGGACACAGACCTGTTCATGTGTCCCAACTAGTGATCCCACTCGAGATGAAGTTTGTCCACACTTATGGAGTTTGTCCACACCGTTTGCTGCAGTCTCGAGCGCTTTGACGGACACATCGTCGATAGTCATAGTTTCCACAGGGTTCTCCTCACTAAAGTACTCATCAAACAGGTCCATACAATCCTCCTGGGTCTCAGGACTAATGTGAGGGATATCACCAGCAATACGTGCAAAGGGTTTGGCCTCCTTGCTCTTGTTGTTCCTGATCTGGTCTGTTGACAAGGGCTTAGACAGAAGGGCTTTGGCTCTGCCCTGCTGCACACTTCTACAAGGTTGCTGTTGTTCCTCATCGAAGTGCCTATTTCTGTGTCTATTGAACTCCTCCTCTACTTTACCTTGCCTGCTCTCCATGTCAGATTCAGGTGACATGGAGTCACCAATGAGGAAAGTGACTTTGGCAGCAGGCTCTTCTTCCTCGTCCAGGAGAAAAGAGGTGGATGCCAAACTCTTGTCTGGAGGCTTCTTCTCCAGTGGGATTCCGGATGACCGAAACATCTTTATAGACAAGCTACTAACCTCTACATCAGGCTTCTCTGACTGTCCTTCTATGTCCACAAAAGGGCCACTCTCCCTGGGAGAGGTAGAACCAACCTTCACCATAGTCTCCAGTCGTGCATCTGGCCTCGGACTGCCCACCTCCCGGAAGGTTGGACCATCGCTGTGATCTTCCGCCCTGATGACTGGTATTACGTGCTGCAGTCGCTGCTCGGGCAGCTGGTCCTCTGGAACCCCAAGGCCCAGTTCTGTGTCTGTGTAGGTGCTGCTTTGCAGGCTGTTGCTATCTGAAGGATAGCCATCTTCTGCCTCAGCACCTTGGGACAGATAGTCGTGGTTGGGCTTGTGCATGGTGACCAGTACGTAATCAGATTCCTCCACCTCACCACGGCGTAAGGAAGTGGTGATGAGTGAGCCAGGCATGACTATGGCCTCATCTTCTGCGCTCTCTAGGAGGTGGGTCTCCAGCAGTTCAGAGCATCGGATGAAGTAAGTGAGTATGTAGAGCAGACGCTGGACAAGTTCTTGCCGTCGGCCCACCACCACAGTGCGAGCCAGACGCACAGGTGAACCGATCGCACCATACA

Function

symbol description
fnip1 Predicted to enable ATPase inhibitor activity and chaperone binding activity. Predicted to be located in lysosomal membrane. Predicted to be active in cytoplasm. Orthologous to human FNIP1 (folliculin interacting protein 1).

NR:

description
PREDICTED: folliculin-interacting protein 1 isoform X2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU169740 True 1626 TUCP 0.52 2 28984168 28985881

Neighbor

gene id symbol gene type direction distance location
LOC103027277 NA coding upstream 90212 28876003 ~ 28893956 (+)
LOC111193960 NA coding upstream 123877 28859259 ~ 28860291 (+)
LOC111193834 NA coding upstream 128604 28854371 ~ 28855564 (+)
LOC103026836 olfm1,olfm1b,LOC103026836,LOC107752936,LOC107675788,LOC107720914,LOC107585389,LOC107661607 coding upstream 433353 28489168 ~ 28550815 (+)
LOC103026552 col5a1,LOC108415203,LOC107675758,LOC107720871,LOC106568813,LOC107752937,LOC106562962 coding upstream 577363 28263514 ~ 28406805 (+)
LOC111193835 NA coding downstream 68843 29054724 ~ 29055463 (+)
LOC103027415 LOC103027415,LOC108431853 coding downstream 167515 29153396 ~ 29156158 (+)
odf2 odf2 coding downstream 309137 29295018 ~ 29316733 (+)
sptan1 sptan1 coding downstream 343046 29328927 ~ 29370499 (+)
specc1l specc1l,LOC108437337 coding downstream 404943 29390824 ~ 29418906 (+)
LOC111193938 NA non-coding upstream 7563 28974498 ~ 28976605 (+)
LOC111193937 NA non-coding upstream 12891 28962449 ~ 28971277 (+)
G125668 NA non-coding upstream 67051 28916809 ~ 28917117 (+)
G125620 NA non-coding upstream 365122 28618822 ~ 28619046 (+)
G125536 NA non-coding upstream 1282552 27699113 ~ 27701616 (+)
LOC111193939 NA non-coding downstream 73511 29059392 ~ 29063698 (+)
G125810 NA non-coding downstream 173512 29159393 ~ 29159948 (+)
G125812 NA non-coding downstream 175263 29161144 ~ 29161620 (+)
G125813 NA non-coding downstream 176137 29162018 ~ 29162612 (+)
G125814 NA non-coding downstream 177302 29163183 ~ 29163464 (+)
G125669 NA other upstream 62580 28918856 ~ 28921588 (+)
LOC103039679 NA other upstream 82154 28895071 ~ 28902014 (+)
G125538 NA other upstream 1279237 27703673 ~ 27704931 (+)
LOC111193935 NA other upstream 1407427 27567213 ~ 27576741 (+)
LOC111193934 NA other upstream 1588206 27390892 ~ 27395962 (+)
LOC111188228 specc1l,specc1la,LOC108437337,LOC107711823,LOC107667544,LOC107602822 other downstream 452873 29438754 ~ 29444678 (+)
snrpd3 snrpd3,smd3,LOC106563120,LOC105014836 other downstream 487579 29473460 ~ 29479370 (+)
G126011 NA other downstream 751417 29737298 ~ 29743633 (+)
G126040 LOC108436799,LOC104955091,LOC103374273,LOC100049520,LOC107397331,LOC101074260 other downstream 870157 29856038 ~ 29860217 (+)
G126613 LOC108415780 other downstream 3307483 32293364 ~ 32293744 (+)

Expression


Co-expression Network