LOC111193938


Basic Information

Item Value
gene id LOC111193938
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035910.1
NCBI id CM008313.1
chromosome length 38842236
location 28974498 ~ 28976605 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XR_002650820.1
agagcctgagggtccaacatacatcggtatcgggtcagacagCTGAAGCTGAATGATGAGCTGCTGTGTGAGCCTGCCAATAAAACAGAGCGTCCAGCTGAATACATCACATCTTTATTTCATCTAACAAAGCAGAGTCCAGCTAGGGAGCCGTGGGAGAGAATGGGTTACATTAACttcaatttaaatttatttaagtttcttctgtatttcttctgtaaagctgctgacTTCAATCCATTTTAAGCTATATTTGAAATGTAAACTATTGgcataaaaataatgcatgTATTCACAAATAAATTTCCTCATTATCTTTGA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_002650820.1 True 321 lncRNA 0.37 2 28974498 28976605

Neighbor

gene id symbol gene type direction distance location
LOC103027277 NA coding upstream 80542 28876003 ~ 28893956 (+)
LOC111193960 NA coding upstream 114207 28859259 ~ 28860291 (+)
LOC111193834 NA coding upstream 118934 28854371 ~ 28855564 (+)
LOC103026836 olfm1,olfm1b,LOC103026836,LOC107752936,LOC107675788,LOC107720914,LOC107585389,LOC107661607 coding upstream 423683 28489168 ~ 28550815 (+)
LOC103026552 col5a1,LOC108415203,LOC107675758,LOC107720871,LOC106568813,LOC107752937,LOC106562962 coding upstream 567693 28263514 ~ 28406805 (+)
LOC111193835 NA coding downstream 78119 29054724 ~ 29055463 (+)
LOC103027415 LOC103027415,LOC108431853 coding downstream 176791 29153396 ~ 29156158 (+)
odf2 odf2 coding downstream 318413 29295018 ~ 29316733 (+)
sptan1 sptan1 coding downstream 352322 29328927 ~ 29370499 (+)
specc1l specc1l,LOC108437337 coding downstream 414219 29390824 ~ 29418906 (+)
LOC111193937 NA non-coding upstream 3221 28962449 ~ 28971277 (+)
G125668 NA non-coding upstream 57381 28916809 ~ 28917117 (+)
G125620 NA non-coding upstream 355452 28618822 ~ 28619046 (+)
G125536 NA non-coding upstream 1272882 27699113 ~ 27701616 (+)
G125529 NA non-coding upstream 1296854 27677430 ~ 27677644 (+)
LOC111193939 NA non-coding downstream 82787 29059392 ~ 29063698 (+)
G125810 NA non-coding downstream 182788 29159393 ~ 29159948 (+)
G125812 NA non-coding downstream 184539 29161144 ~ 29161620 (+)
G125813 NA non-coding downstream 185413 29162018 ~ 29162612 (+)
G125814 NA non-coding downstream 186578 29163183 ~ 29163464 (+)
G125669 NA other upstream 52910 28918856 ~ 28921588 (+)
LOC103039679 NA other upstream 72484 28895071 ~ 28902014 (+)
G125538 NA other upstream 1269567 27703673 ~ 27704931 (+)
LOC111193935 NA other upstream 1397757 27567213 ~ 27576741 (+)
LOC111193934 NA other upstream 1578536 27390892 ~ 27395962 (+)
G125687 fnip1 other downstream 7563 28984168 ~ 28985881 (+)
LOC111188228 specc1l,specc1la,LOC108437337,LOC107711823,LOC107667544,LOC107602822 other downstream 462149 29438754 ~ 29444678 (+)
snrpd3 snrpd3,smd3,LOC106563120,LOC105014836 other downstream 496855 29473460 ~ 29479370 (+)
G126011 NA other downstream 760693 29737298 ~ 29743633 (+)
G126040 LOC108436799,LOC104955091,LOC103374273,LOC100049520,LOC107397331,LOC101074260 other downstream 879433 29856038 ~ 29860217 (+)

Expression


Co-expression Network