LOC103039531 (LOC103039531,LOC108439545)


Basic Information

Item Value
gene id LOC103039531
gene name LOC103039531,LOC108439545
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035910.1
NCBI id CM008313.1
chromosome length 38842236
location 26816537 ~ 26824793 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007256595.2
ACTACGTCATCGGCGCACTGCCACCACAACAACCGGAGCGCGAGCCGTTAGCAGTTAGCCGGTCAGATGTTCATATAgtcttatatttatactgatttatttgttatttagttGATTGTTAGCGTTTTAATGCACTTTACGGAGCAGCATGTTTAGGTTTCTGACTGCAGTTTGTTAGTTTTGGAGTTCAGCCTCTGTTTTAAGGCATTGTTATTAGACTGCTACACAAAGCTCcgctgttttattttgtttaatttaacctCGGTAACAATATTAATTTAGTGAGTAAATTTAAATCCCAAGTCTGAAGCTGAGTTTTGAATTCTCCATTCACCAGTTTGGGTCTACAAATATTAGTAAATAGtctaaattaaagtaatttggCAACAGATTATCACTAACATGCTTATTTTTATAAAGCTGTAATGTGAAAATGAATGCAGTCTGTATGTATGCATGGATTTAAATGAGCAATTCTATAAACATAACAGTAACTTGACATTTCTGAATTGACTACatgacattaaaatatatgatCTGTAAGTAATGtaacctaactaactaaatagGTTAACCTATCTCCTTAAACTGGACATAGAGTAGGATGGGCCAACTCCAAGCCTTACAGGAAGCTCAGAATAAAACACAGCATATTTAATGATGGACAATGAAGAAGATCACTTGGAATCACTTGGAGAGAAACTGCATGACCTGATTCTTCATAAACATGCAGATATGGCTCCAAAATTAACAGGAATGCTGCTGGAATTGCCAggagctgtgattggtcagatgCTGCAGGATGAGGAGCTCCTTACTAAAGCACTGGATCGAGCACTTGCAGTGTTGCAGCCTGATGACAGCAAACTCCCATCCAAGGCTGATGATGCAGATTCTGTATCCTCTGACTCTCTGGGTGAACAGCTGTACGACCTCATCGAACTCTACAACACCGGACAAACTCAGAAAATAACAGGTATGCTATTAGAGCAGAAAAAAGAGGCAGTGCTTAAGCTGCTGTCAGATCCAACCCTATTGGAGGAAAAAGTCCAAACTGCCCTTAAAACATTACAAGATAGTGGGAAGGTCCAGCAGGAGACTGACGTGAGTGACAGCTCAGACAGAGATGAAGCAGAAGCAATCGGAGAAACACTTTTTGGACTCGTACAAGATATAGAGCCTGTCCACTGCGCTGACATCACAGggatgCTGTTAGAAATGGACTCTGAGACCCTGCAACAGATTATGTCTGATCGAGTCATGCTGGAGGTTGCAGTGCAACGGGCAAAAAGTGCTCTGGAGGGCGCCCTGAGTCCGCCACAACCAAGGAAGGATTAAAATGTTTCATTGCTTTAAACCATCCTGCTATATAATCATAAAGAGCTGTGGACATTTATATTCTAAGCTGGAAACCTGAAAGGCCTAGACTTCCATGAACAGTCCTGTTCCAGCTTGAACTATGCCACTGCTGTTTCACTCCTTTAGTCcctgttcagttcagttcagctcaTCAGCTGGCTGAAATCCAGTGCTGGATCTATTCAGTGGGCTTTAGAAAGCTGCAGCCCAGGACCTAGCCCACCAGGGGATGCTACAGGGTAAAAAGTGAATGCAGCCCTGGTGTTAAACCAGGTAGATAGCCTAGTTTGCAATTAATGGAACTGAATCAGACAAATGGCAGTGTGTAGAATAATGTGTATGAAtggatttttaccaaatttgatACAGCTTGTGCTTATGATGTTCATGATATCCATTCTGAGAACTATGGTATCCAggttatttcatttgttttatcttTCAGATGAAAGATCCTATGCTCCCCATATCCTGTGCTTTCCTACATTCCAGTTTAGTAAATTGTTCATGTTACTTGTTTAATCTAATCCAAACTATGATCCTTACTTTTAATATAGTTCATATCaaactatatttatttaatatagttttataaCTGATGCACATCAATGTTAATATTCATAGCACAGCATTCATAAGACACCAAACAACTTTGTTGTTTATATTAGTCCAGATGTCTTGATCTTAGGAGCAATCCCATTtccctgctgtctgttgcaccatttaggataactaactaactagctaactactgAGATGAACTAGCAttgtttttatgcttgttattaaGTAAATGGCcataaacattgaaactacacattaaactatgacAATATAGTTTAACATAGAggaaaaaatcttaaatttctttggtcgcttgtgctGCCAttttgccagtgattctcagccCCCTAGACTTGAATTGGCAAAACCATGGGTGATCCAATCACAAATGACTGACTAAACACACAGCCATTCACACTGTGAATGTGTGGTAACTGTGTGGTCTCACAGTTAGAGAGGAGGCAAACCAGTTTTTGTGTTTAGAGTAGAGCTGTCATGCAGTTAACCTTGAAACTTTTGTATcatgtgaagttttttttttttacgtaacttcacatgatacattttctctctctctctcttacacacacttgcTTGGTCATGCGCATACACTTCTATATGCTATTTTCTGTGCAATGTGAGAATGTTTATGTTCTGTCCTACACAGCAATCAGCTTTATAAGCTGTCTAAGCAGAGACACATGTGACTAAAATCTTACACTTGAAATGGGGTGCAGGTGTTCTCTGGTGAACTGTAGACGTTCCCTGAATTTGCACACCACCCATGAAAATCAGACTTGTCTGGTATCTTTCTGCTGATCTTTAACAGCAGCTGTGCAGCTTAAGCTACTTGTAGGTTCAGTAATGACATTTTAGGGTATTTGGAGACTTCTTAACACATTTTATGGAAGTGCAAGACCTGCCTGCCCTCAACATGTTGGCAGTTGTTTCACTTGTGAAGTATTTTGTAACAGTAAAACGGTCGAACAGTAAAACGATTTCTAGACTCCTCCCACATCCTCTTTAAGCATGTTCTGATCATCTGAGAGTGTGCTGCACATGATACTAATTTTACACACTCTgagtaaaataagtatttattcctaattttaacattttataaatgttcaTTGATAGACGCATTATGTACATGccaaatatatgaaaatatctAATATTAGCATCAACCGGTTATGCTCATATCATATAATCCCTAAatgatttctttgttttaatgcatGCAAATTGTAAAAATGCATTTCTGAATCTAAGCACATTTAACAATCAGCCATAATATTGAAACCATCTGCCTATACTAAAACTGTGTAGATCCAGTTAATTCTGCCACAACAGCTCTGACTCATTGAGGCATGGACTCCACGAGAACCCTCAAGGTTTTCGTTGGTTTCTGTTAATATCGGAAGATCCTTTATGTCCTGTTATCAGTGAAATGCTTTAGGAGCTCATGTCCCTGTTGTCCTTCCTTGGAGCACTTTTGGAATGTAGgctactgaccactgcatactCAAAACACCCATAAAATAAAACCTGATGTTCTGACTCAGTCATCTAGCCATTGCAGTTCAGTTCTTGTGATAGTGCTTGCCCAATTTtcctgactgttcacttgctacataaaatataaacccCTTGATAAAGCCAATGGAAGCAAATCATCAATGCCATTCACTTTAACTTGcagtaatttaaatattatgacTGATTGATGTGTTACAAAATATTGCTATATAAAACAATGATAATGCTGTTCCTTTTGTGCATTTGTATTGTtctaaaacaaaactgtaaataaatcattttaagttaaaaaagaaA

Function

NR:

description
uncharacterized protein LOC103039531

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007256595.2 True 3759 mRNA 0.38 7 26816537 26824793

Neighbor

gene id symbol gene type direction distance location
LOC103044552 col27a1a,LOC108439562,LOC108279101,LOC107585625,LOC107737153,LOC107705943,LOC107675693,LOC107584663 coding upstream 44864 26679073 ~ 26771673 (+)
LOC111193926 loxhd1,LOC107599385,LOC107705957,LOC107661623 coding upstream 203066 26591866 ~ 26613471 (+)
LOC103044265 loxhd1,LOC107737181,LOC107675695 coding upstream 224193 26561481 ~ 26592344 (+)
st8sia5 st8sia5,LOC107737155,LOC107705967 coding upstream 275727 26518665 ~ 26540810 (+)
LOC103037769 rpl37,LOC107705959,LOC107585626 coding upstream 302936 26509230 ~ 26513601 (+)
stbd1 NA coding downstream 168520 26993313 ~ 26997845 (+)
shroom3 LOC103156599,LOC103373559 coding downstream 192820 27017613 ~ 27100940 (+)
ccng2 ccng2,LOC107720902,LOC107661592,LOC107675753,LOC107584590 coding downstream 313043 27137836 ~ 27143258 (+)
LOC103041500 wdr38 coding downstream 354596 27179389 ~ 27188203 (+)
LOC103042105 prodha,LOC108439536,LOC107661597,LOC106564257 coding downstream 375622 27200415 ~ 27221677 (+)
G125036 rpl28,LOC107585697,LOC107675734 non-coding upstream 2446 26811874 ~ 26814091 (+)
G125056 NA non-coding upstream 27362 26788421 ~ 26789175 (+)
LOC111193930 NA non-coding upstream 36450 26778818 ~ 26780087 (+)
G125028 NA non-coding upstream 134001 26619618 ~ 26682536 (+)
LOC111193925 NA non-coding upstream 327525 26473006 ~ 26489012 (+)
G125067 NA non-coding downstream 7580 26832373 ~ 26834326 (+)
G125078 NA non-coding downstream 28749 26853542 ~ 26856314 (+)
LOC111193931 NA non-coding downstream 42739 26867532 ~ 26879662 (+)
G125091 NA non-coding downstream 72727 26897520 ~ 26898105 (+)
G125097 NA non-coding downstream 100044 26924837 ~ 26925941 (+)
LOC103030814 NA other upstream 758299 26049491 ~ 26058238 (+)
G124810 NA other upstream 837662 25950758 ~ 25978875 (+)
G124573 ddt other upstream 1381652 25431743 ~ 25434885 (+)
LOC103046504 LOC103046504,LOC108410666,LOC105005873,LOC107692298,LOC107736894,LOC107578622,LOC105896593,LOC107737864,LOC108279179 other upstream 1813160 24992462 ~ 25003377 (+)
G124391 NA other upstream 1892897 24923211 ~ 24923640 (+)
G125130 ccni other downstream 235040 27059833 ~ 27117992 (+)
LOC103041801 NA other downstream 368921 27193714 ~ 27195755 (+)
LOC111193934 NA other downstream 566099 27390892 ~ 27395962 (+)
LOC111193935 NA other downstream 742420 27567213 ~ 27576741 (+)
G125538 NA other downstream 878880 27703673 ~ 27704931 (+)

Expression


Co-expression Network