LOC103037769 (rpl37,LOC107705959,LOC107585626)


Basic Information

Item Value
gene id LOC103037769
gene name rpl37,LOC107705959,LOC107585626
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035910.1
NCBI id CM008313.1
chromosome length 38842236
location 26509230 ~ 26513601 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007256589.2
GATTATTTGTTCAGGAAGTGTCTGGTTTTCTCCGGCCGGGCGGAGGGTTTATTTCAGCGCTGCACCAACTTCCGGCCTCTTTCGGACCTCAACTCCAAGAAAGATGACGAAAGGAACGTCGTCTTTCGGGAAGCGCCGCAACAAGACCCACACGCTGTGCCGCCGCTGCGGCTCCAAGGCGTACCATCTGCAGAAGTCCACCTGCGGGAAGTGCGGCTACCCCTCCAAGCGCAAGAGAAAGTACAACTGGAGCGCTAAGGCTAAGAGGCGCAGCACCACTGGAACTGGCCGCATGAGACACATGAAGGTTGTGTTCCGCCGATTCAGGAATGGATTCCGTGAAGGAACTGTCCCCAAACCCAGGCGGGCAGCAGTGGCTGCATCCAGCTCCTCGTAAacaatgtttctaataaacatGTCAACACCATTCTTGCTGTCAGTCATTCATTTGGCTTTTTGTTCAGAAGGTTCTTGGTGTTCTTGGCAGTTGCAGTTTTTTGTACAGCTGTATTAAATGATTCATGTATTGTCAA

Function

symbol description
rpl37 Predicted to enable metal ion binding activity and rRNA binding activity. Predicted to be a structural constituent of ribosome. Predicted to be involved in mitochondrial cytochrome c oxidase assembly and mitochondrial respiratory chain complex I assembly. Predicted to act upstream of or within translation. Predicted to be located in membrane and ribosome. Predicted to be integral component of membrane. Predicted to be integral component of mitochondrial inner membrane. Is expressed in endodermal cell; intestine; liver; and pancreas. Orthologous to human RPL37 (ribosomal protein L37).

NR:

description
60S ribosomal protein L37

GO:

id name namespace
GO:0006412 translation biological_process
GO:0005840 ribosome cellular_component
GO:0046872 metal ion binding molecular_function
GO:0019843 rRNA binding molecular_function
GO:0003735 structural constituent of ribosome molecular_function

KEGG:

id description
K02922 RP-L37e, RPL37; large subunit ribosomal protein L37e

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007256589.2 True 533 mRNA 0.52 4 26509230 26513601

Neighbor

gene id symbol gene type direction distance location
atp5a1 atp5a1,LOC104922468,LOC107661573 coding upstream 80559 26422901 ~ 26428671 (+)
LOC103043662 LOC108439564 coding upstream 148532 26356811 ~ 26360698 (+)
nup188 nup188,LOC107737171,LOC107585640,LOC107599392 coding upstream 390356 26083865 ~ 26118874 (+)
phyhd1 phyhd1,LOC107599403,LOC107585641,LOC107737172 coding upstream 465850 26022646 ~ 26043380 (+)
lrrc8a lrrc8a,LOC107705980,LOC107585642 coding upstream 494251 25969991 ~ 26014979 (+)
st8sia5 st8sia5,LOC107737155,LOC107705967 coding downstream 5064 26518665 ~ 26540810 (+)
LOC103044265 loxhd1,LOC107737181,LOC107675695 coding downstream 47880 26561481 ~ 26592344 (+)
LOC111193926 loxhd1,LOC107599385,LOC107705957,LOC107661623 coding downstream 78265 26591866 ~ 26613471 (+)
LOC103044552 col27a1a,LOC108439562,LOC108279101,LOC107585625,LOC107737153,LOC107705943,LOC107675693,LOC107584663 coding downstream 165472 26679073 ~ 26771673 (+)
LOC103039531 LOC103039531,LOC108439545 coding downstream 302936 26816537 ~ 26824793 (+)
LOC111193925 NA non-coding upstream 20218 26473006 ~ 26489012 (+)
G124961 NA non-coding upstream 102812 26368157 ~ 26406418 (+)
G124969 NA non-coding upstream 108731 26390387 ~ 26400499 (+)
G124970 NA non-coding upstream 110377 26391839 ~ 26398853 (+)
G124952 NA non-coding upstream 142205 26365018 ~ 26367025 (+)
G125028 NA non-coding downstream 106017 26619618 ~ 26682536 (+)
LOC111193930 NA non-coding downstream 265217 26778818 ~ 26780087 (+)
G125056 NA non-coding downstream 274820 26788421 ~ 26789175 (+)
G125036 rpl28,LOC107585697,LOC107675734 non-coding downstream 298273 26811874 ~ 26814091 (+)
G125067 NA non-coding downstream 318772 26832373 ~ 26834326 (+)
LOC103030814 NA other upstream 450992 26049491 ~ 26058238 (+)
G124810 NA other upstream 530355 25950758 ~ 25978875 (+)
G124573 ddt other upstream 1074345 25431743 ~ 25434885 (+)
LOC103046504 LOC103046504,LOC108410666,LOC105005873,LOC107692298,LOC107736894,LOC107578622,LOC105896593,LOC107737864,LOC108279179 other upstream 1505853 24992462 ~ 25003377 (+)
G124391 NA other upstream 1585590 24923211 ~ 24923640 (+)
G125130 ccni other downstream 546232 27059833 ~ 27117992 (+)
LOC103041801 NA other downstream 680113 27193714 ~ 27195755 (+)
LOC111193934 NA other downstream 877291 27390892 ~ 27395962 (+)
LOC111193935 NA other downstream 1053612 27567213 ~ 27576741 (+)
G125538 NA other downstream 1190072 27703673 ~ 27704931 (+)

Expression


Co-expression Network