G124952


Basic Information

Item Value
gene id G124952
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035910.1
NCBI id CM008313.1
chromosome length 38842236
location 26365018 ~ 26367025 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU168705
gggcGCTTTAGCTACGCTCACATGTGCTTCTTCAGTAGGCATTTAGGGTCAAAGGTCATGGCAGGGTTTCACactacactcatacacacacaaacacacacacactcagacacacaatCAGACAAATACATTCAGTCACACACAATcaggctcacacacacacgctacatcAGTCTGGTAGTGTTACAGATCATCACAGCTTAAAGGAGCTAAATTAcattcatgcacacacacacacacacacactcacatactgACAGGCGTACACTTTTAAAGAACAGCCCAAACACAGATTCATGCAGCTACTAGGTCACAATGCTCCAGACGTCTATCTACAGCCCTCCACCAATCAGAAACCATCTGTCCATCCGATGATAGCCAATCAGTCGCCCTCCTGCAGTCTCTGTGGTGAGTAATGGGAGCTGCTTCTGtttgtatacatatttttttgcttgttttgtctgttttctgtgtgtgtgtctttttggCTTCTCTACAAGAACATTAGGGCACAGCTAACTATCATGTAAGACCCTTAGCATGTTTAGCGCTGTGCAAAAGTCAGAGACCACCCCTCGCACTAACTCACCGTGGAACGGGCTTTTAAGTACAAGTTtaattttttgaaaatatattcagtgtttctgctgAAATCAACAGGATATTTTCAATGCAAACCACtttatctgttaaacatggtggtgggtgtGTTGTCCACACCTGGCAAGTGACAAAGCGGCAAACGACCAGTCGTTTCCTATGAGAGAATgcaagagacaaaaaaaacaaatctagtTGAGAGTGTCTCAGCTTCGTGCAAATGAATTTTGACATGGTAAGGTAACATTCTAAACTGACTTGGCGAACAAATTTGTCGGACCAATTTTCACatttctgaacttctgaaaACACTGTCTTGAAAAATAAGTCTGCTTGTGTTTAAAGGCCTGGGTGAGTCGAAATTAAGCAAACAAAGGGTGATCTCtgaatttcgtacagtactgcaagcacatacaccacacacacacacatgcacacacacacacaccacacaaacataCATGTTTACTGAGAAAACAGCAGCTTGATATAAATGCACACATGTACAagcctgtgagtgtgtgcatatgtgtgtgtgtgtgtgtgtgtggctacaAGCAAAGGGTCTTTTACTAGGGGCATGGCTTCAGAATTGCACACACATATGctactaaaacacacacacacaaacaaacacacatagcACACTTAGCAACCCTATAAAGAACATCCCTTATACATTACTCAGTAAAATCCTTCaaagcatgtgtgtatgtgtgtgggtgtgtgtaagtgtgtgagagtctcATTGGCTCAGTAaagcgtgtgagtgtgtgtaagatgGCTCATTGATCtcatagagtgtgtgtgtgtgtgtgtgtgagagagagagagtaggggGTTCATATAAGACTTTGTTAGCTGTCAGACTGTGTGTGTAGAGGAAATAAGAgcctttaatgtgtgtgtgtgtgtttgtgtgtgtttgtcttagCAAGTGCATCGTGTCTATGAGtagcatgtgtgtttgtgtgtgtgtaggcgtATCTCAGCTTTTAGGTGTCTGTGTGCTTCAACTCCTAGGCATGAGCtgagtctttgtgtgtgtgggtgtgtgtgtttgtgtgtttcagctTTCAGGTGTGAGCTGTGTCTGGATGTCCACTCTGCAGATGGGACACTTCCTGCTGGTGGCGAGCCACTGGTCCACACACGCCTGGTGGAAAAGGTGCATGCAGGGCAACCGcctagagaaaaagagagagagagagagagagagagaaaggaagaaagaaagagagagagagattacagtgactgcttttttttaactgcaggGCCACTGAACCTTTCAATGGGATggcttaaaggtctcattccatcattttttcattcattttaaaatgttcagttgtggtctctag

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU168705 True 1964 lncRNA 0.43 3 26365018 26367025

Neighbor

gene id symbol gene type direction distance location
LOC103043662 LOC108439564 coding upstream 4320 26356811 ~ 26360698 (+)
nup188 nup188,LOC107737171,LOC107585640,LOC107599392 coding upstream 246144 26083865 ~ 26118874 (+)
phyhd1 phyhd1,LOC107599403,LOC107585641,LOC107737172 coding upstream 321638 26022646 ~ 26043380 (+)
lrrc8a lrrc8a,LOC107705980,LOC107585642 coding upstream 350039 25969991 ~ 26014979 (+)
rapgef1 LOC108412075 coding upstream 414764 25882327 ~ 25950254 (+)
atp5a1 atp5a1,LOC104922468,LOC107661573 coding downstream 55876 26422901 ~ 26428671 (+)
LOC103037769 rpl37,LOC107705959,LOC107585626 coding downstream 142205 26509230 ~ 26513601 (+)
st8sia5 st8sia5,LOC107737155,LOC107705967 coding downstream 151640 26518665 ~ 26540810 (+)
LOC103044265 loxhd1,LOC107737181,LOC107675695 coding downstream 194456 26561481 ~ 26592344 (+)
LOC111193926 loxhd1,LOC107599385,LOC107705957,LOC107661623 coding downstream 224841 26591866 ~ 26613471 (+)
G124927 notch1a,LOC108413122,LOC108279276,LOC107599362,LOC107675779,LOC107737167,LOC107661569 non-coding upstream 120038 26244391 ~ 26244980 (+)
G124915 NA non-coding upstream 163375 26200234 ~ 26201643 (+)
G124899 NA non-coding upstream 226972 26136755 ~ 26138046 (+)
LOC111193923 NA non-coding upstream 301536 26062973 ~ 26063482 (+)
G124877 NA non-coding upstream 303676 26060805 ~ 26061342 (+)
G124961 NA non-coding downstream 1132 26368157 ~ 26406418 (+)
G124969 NA non-coding downstream 23362 26390387 ~ 26400499 (+)
G124970 NA non-coding downstream 24814 26391839 ~ 26398853 (+)
LOC111193925 NA non-coding downstream 105981 26473006 ~ 26489012 (+)
G125028 NA non-coding downstream 252593 26619618 ~ 26682536 (+)
LOC103030814 NA other upstream 306780 26049491 ~ 26058238 (+)
G124810 NA other upstream 386143 25950758 ~ 25978875 (+)
G124573 ddt other upstream 930133 25431743 ~ 25434885 (+)
LOC103046504 LOC103046504,LOC108410666,LOC105005873,LOC107692298,LOC107736894,LOC107578622,LOC105896593,LOC107737864,LOC108279179 other upstream 1361641 24992462 ~ 25003377 (+)
G124391 NA other upstream 1441378 24923211 ~ 24923640 (+)
G125130 ccni other downstream 692808 27059833 ~ 27117992 (+)
LOC103041801 NA other downstream 826689 27193714 ~ 27195755 (+)
LOC111193934 NA other downstream 1023867 27390892 ~ 27395962 (+)
LOC111193935 NA other downstream 1200188 27567213 ~ 27576741 (+)
G125538 NA other downstream 1336648 27703673 ~ 27704931 (+)

Expression


Co-expression Network