G125028


Basic Information

Item Value
gene id G125028
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035910.1
NCBI id CM008313.1
chromosome length 38842236
location 26619618 ~ 26682536 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU168807
ATTTTCTCAGCATTGTTAGCTAGCTGATGCATTAAGTCATTCATCCTGTATGAGCAATGTAAGCTTTATAACGTTTTGCTCATTCAAAAGAGAATTGATCATGTTAAATAATAAGCCTCACATGTTGGTTGGTTGCTAGCTAGCCTGTTTTGAAActcaataattcaataattcagttaacACATATTAACacatggaaacacacacacaggcatatacacacactcacagtgaAGATGCGGAGTGCAGCACAGTGTAACTCAGGGAAGGGCTGAGTGCTGATGTTTCTGATCATCTCCATCGGCTTAGAGCTCAGCAGTGAAAACCAAGACTCTGTCAGCAACAGCAGATCATCTGTTTGCTGCTCCAACTGcagaaacacacatacaaacacacacacacaaacacacacacaaacacacacacacaaacacacacacacacacaaacacacacacaaacacacacacaaacacacacacacacacacacacacaaacaca

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU168807 True 503 lncRNA 0.41 2 26619618 26682536

Neighbor

gene id symbol gene type direction distance location
LOC111193926 loxhd1,LOC107599385,LOC107705957,LOC107661623 coding upstream 6147 26591866 ~ 26613471 (+)
LOC103044265 loxhd1,LOC107737181,LOC107675695 coding upstream 27274 26561481 ~ 26592344 (+)
st8sia5 st8sia5,LOC107737155,LOC107705967 coding upstream 78808 26518665 ~ 26540810 (+)
LOC103037769 rpl37,LOC107705959,LOC107585626 coding upstream 106017 26509230 ~ 26513601 (+)
atp5a1 atp5a1,LOC104922468,LOC107661573 coding upstream 190947 26422901 ~ 26428671 (+)
LOC103039531 LOC103039531,LOC108439545 coding downstream 134001 26816537 ~ 26824793 (+)
stbd1 NA coding downstream 310777 26993313 ~ 26997845 (+)
shroom3 LOC103156599,LOC103373559 coding downstream 335077 27017613 ~ 27100940 (+)
ccng2 ccng2,LOC107720902,LOC107661592,LOC107675753,LOC107584590 coding downstream 455300 27137836 ~ 27143258 (+)
LOC103041500 wdr38 coding downstream 496853 27179389 ~ 27188203 (+)
LOC111193925 NA non-coding upstream 130606 26473006 ~ 26489012 (+)
G124961 NA non-coding upstream 213200 26368157 ~ 26406418 (+)
G124969 NA non-coding upstream 219119 26390387 ~ 26400499 (+)
G124970 NA non-coding upstream 220765 26391839 ~ 26398853 (+)
G124952 NA non-coding upstream 252593 26365018 ~ 26367025 (+)
LOC111193930 NA non-coding downstream 96282 26778818 ~ 26780087 (+)
G125056 NA non-coding downstream 105885 26788421 ~ 26789175 (+)
G125036 rpl28,LOC107585697,LOC107675734 non-coding downstream 129338 26811874 ~ 26814091 (+)
G125067 NA non-coding downstream 149837 26832373 ~ 26834326 (+)
G125078 NA non-coding downstream 171006 26853542 ~ 26856314 (+)
LOC103030814 NA other upstream 561380 26049491 ~ 26058238 (+)
G124810 NA other upstream 640743 25950758 ~ 25978875 (+)
G124573 ddt other upstream 1184733 25431743 ~ 25434885 (+)
LOC103046504 LOC103046504,LOC108410666,LOC105005873,LOC107692298,LOC107736894,LOC107578622,LOC105896593,LOC107737864,LOC108279179 other upstream 1616241 24992462 ~ 25003377 (+)
G124391 NA other upstream 1695978 24923211 ~ 24923640 (+)
G125130 ccni other downstream 377297 27059833 ~ 27117992 (+)
LOC103041801 NA other downstream 511178 27193714 ~ 27195755 (+)
LOC111193934 NA other downstream 708356 27390892 ~ 27395962 (+)
LOC111193935 NA other downstream 884677 27567213 ~ 27576741 (+)
G125538 NA other downstream 1021137 27703673 ~ 27704931 (+)

Expression


Co-expression Network