G125898


Basic Information

Item Value
gene id G125898
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035910.1
NCBI id CM008313.1
chromosome length 38842236
location 29425931 ~ 29426324 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU170010
cttcgtaatcttcttattattattattattattattattattattattcttacgCCTTTTTTTCTGTACGCTACTCCTCCTAGAGCTTTCAACGTAGAATCACGAAACTTTCACGGATCGTAGGACCTATGCCAACTTAGCgtgcttgtgctttttggagCGATTTAtcgtacggttttcgtaaaaacttcgtaaacgtacgcattttttccccataggaatgaatggggcgAAATTTTAAACGTCCGTAACCGccacaatttttgagatacgaAGACCAAATTTGGCGAGCTTATAGATCTTACCGAGATCTTAAAATTAATAGGAGGTTGCGAAGCGATACGACGTACGGTTTTCGTACAATTTTCGTACGAAGTTTtcccatagaaatgaa
>TU170011
tattattattcttacgCCTTTTTTTCTGTACGCTACTCCTCCTAGAGCTTTCAACGTAGAATCACGAAACTTTCACGGATCGTAGGACCTATGCCAACTTAGCgtgcttgtgctttttggagCGATTTAtcgtacggttttcgtaaaaacttcgtaaacgtacgcattttttccccataggaatgaatggggcgAAATTTTAAACGTCCGTAACCGccacaatttttgagatacgaAGACCAAATTTGGCGAGCTTATAGATCTTACCGAGATCTTAAAATTAATAGGAGGTTGCGAAGCGATACGACGTACGGTTTTCGTACAATTTTCGTACGAAGTTTtcccatagaaatgaa

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU170010 True 394 lncRNA 0.37 1 29425931 29426324
TU170011 False 356 lncRNA 0.40 1 29425969 29426324

Neighbor

gene id symbol gene type direction distance location
specc1l specc1l,LOC108437337 coding upstream 7025 29390824 ~ 29418906 (+)
sptan1 sptan1 coding upstream 55432 29328927 ~ 29370499 (+)
odf2 odf2 coding upstream 109198 29295018 ~ 29316733 (+)
LOC103027415 LOC103027415,LOC108431853 coding upstream 269773 29153396 ~ 29156158 (+)
LOC111193835 NA coding upstream 370468 29054724 ~ 29055463 (+)
LOC103047110 adora2a,LOC108437362 coding downstream 21446 29447770 ~ 29459556 (+)
LOC103036346 camkk2,LOC108437385,LOC107739694,LOC107736868 coding downstream 55644 29481968 ~ 29510230 (+)
LOC103045779 zgc:113162,LOC108436778,LOC105889108,LOC107661621,LOC107692271,LOC107584524,LOC107736869 coding downstream 93448 29519772 ~ 29565704 (+)
LOC103028569 NA coding downstream 421589 29847913 ~ 29852857 (+)
slc31a2 NA coding downstream 523849 29950173 ~ 29967585 (+)
G125897 NA non-coding upstream 1680 29423722 ~ 29424251 (+)
G125883 setb,LOC108279391,LOC103047620,LOC108437330,LOC107584530,LOC107675639 non-coding upstream 37757 29382946 ~ 29388174 (+)
G125885 NA non-coding upstream 43318 29381985 ~ 29382613 (+)
G125892 NA non-coding upstream 44875 29379650 ~ 29381056 (+)
G125891 LOC107584613 non-coding upstream 50115 29374585 ~ 29375816 (+)
G125901 NA non-coding downstream 2062 29428386 ~ 29434129 (+)
G125903 NA non-coding downstream 9444 29435768 ~ 29436005 (+)
G125976 NA non-coding downstream 89138 29515462 ~ 29515714 (+)
G125985 NA non-coding downstream 152929 29579253 ~ 29579675 (+)
G126001 NA non-coding downstream 224700 29651024 ~ 29717342 (+)
G125687 fnip1 other upstream 440050 28984168 ~ 28985881 (+)
G125669 NA other upstream 504343 28918856 ~ 28921588 (+)
LOC103039679 NA other upstream 523917 28895071 ~ 28902014 (+)
G125538 NA other upstream 1721000 27703673 ~ 27704931 (+)
LOC111193935 NA other upstream 1849190 27567213 ~ 27576741 (+)
LOC111188228 specc1l,specc1la,LOC108437337,LOC107711823,LOC107667544,LOC107602822 other downstream 12430 29438754 ~ 29444678 (+)
snrpd3 snrpd3,smd3,LOC106563120,LOC105014836 other downstream 47136 29473460 ~ 29479370 (+)
G126011 NA other downstream 310974 29737298 ~ 29743633 (+)
G126040 LOC108436799,LOC104955091,LOC103374273,LOC100049520,LOC107397331,LOC101074260 other downstream 429714 29856038 ~ 29860217 (+)
G126613 LOC108415780 other downstream 2867040 32293364 ~ 32293744 (+)

Expression


Co-expression Network