G126001


Basic Information

Item Value
gene id G126001
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035910.1
NCBI id CM008313.1
chromosome length 38842236
location 29651024 ~ 29717342 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU170147
ttaaattaaacagacaaataatgaaacaaatcaaatcaaatcaaatttatttgtatagcgctttttacaacaggtgttggcacaaagcagctttacagaaacatgattacaggacaaagaatcaggcaaaacattacacatagaaaatacagaatacagaacccccagtgagcgcggaggcaaggaaaaactccctcagagctgcaggaggaggaagaaaccttgggaggaccaagactcacattaaaggggggaccatcctaccactggtcaaacggcttttaaatagaaatttaaaaagtcttttatacatctatataggttttatgtactcaggagtgtaatagcgccactaatggcttggatgtaatctgtagtggagagtaagatggtcgatgagcagctgatctgtggtggtggtggagaagagctgacttcagaaacttccatcagtctggccggacaggagacgcgagagcctgagggtccaacatcggtatcgggtcagacaggtgggcagtcagtaactcggaggaaggcagagagatggaattagtttttactggatttatgcaaaactgagaatattaaaacattatcagagtgtggcaaatgactccggcagaactgaataaaacagcctaactaaaggcagagagccagaaggtaacatagacatggaggcaccctgaaacaccagcatccacccactccaccgtccacaaacctgagtgaccgtgtgcagtgggagaacaacagcaccagcatctcagtttaccacaatttcctctgtccatgaacccctgaatctgcagccttatctaaagggaaaaacattaattaccaaaagctaaactaaacaagtaagttttcagtctagacttaaagattgagactgtgtctgagtcccgaacatattcggggagattattccagagttgaggcgctttataagagaaagctcttcctcctgcagagctcctctgaattttaggcactactaataaaccagcaccctgagatctgagtaatcgcggtggttcataacaggagatgaggtcttgtaaatactcaggagcgagtccgtgtagggctttatacgttaacaggagaattttatagtctatgcggaatttgactggaagccagtgcagtgctgatagtactggactaatatggtcaaattttctagttttagtaaggaccctggctgcagcattttgaactagctgaagtttatttaagttactgccggaacatccagacagtagcgcattacaataatctagccttgaggtaataaaggcatgtactaatttttctgcgtcatgcagtgatagggcatttcttagcttggcgatgttacggaggtgtagaaaagctgttctagtaacattagatatgtgtttatcgaatgctagatctgaatctatgataactccaaggtttttagctgctgaaccaggggtggctgagtagtcagccagatttagcattaagtctgataatttatttctagcagctttgggcctaataggagaacttctgttttatcactatttaataggaggaagttgtgcgacatccatgattttacatcttctacacaatcctcgattttctttaatctcactctgtcatcaggtttggctgatatgaagagctgcgtgtcatccgcataacaatgaaaattcacattgtgttttctaataactttgcccagtgggagcatatataatgtaaataataacggtcctaatatagagccttgtggaattccatatcttaccttggtataactggaagacatcatttatcctcacaaactgatagcgatcggttaagtacgatttaaaccatgctaaggcagttccggttacaccgaccatgttctctagtctttctaaaaggatagtatgatctattgtatcaaaggctgcgctcagatcgagaagtacgagtaaggaaacacagccttggtcggcggctataagtagatcgtttgttattctaactaaagctgtctcagtgctatgataaggcctaaatccagattgaaatttttcatagatctggtttctttgcaggtaagagcaaagttgttgggctacagctttttctaaaatcttagaaataaagggtaagtttgaaataggtctatagttagacagtacactaggatcaagatttggtttcttgatcagaggtttaattacagctgttttaaaggctttgggtacatggcccagggcgagcgatgagtttactatcattaacagaggtttaattatatctggcagtacctgttttaataattttgtgggaacagcatcaagtgtgcaggttgtgctgtttgaagaggagataattttctctagttctagctgtggaagtgggttaaagacttccaacctaacttcagtaacagggttttgttctagatcagccagaccagatgacagagaggatgtaatatttatctgtttaattttatcccgaatgttttcaattttactattgaagaagtccataaaatcgttgctggtgtaaatggctggaatctgaggttcagtacctgcctggtttttagttaatttggaaataacactaaagagaactctaggattatttttatttatctcgatctgtgaggccagatatgctgagcgggctttattaagttcttttctatatttaacaagactgtctttccacgcagagtgaaacacttccagtttagttgatcgatatttacgctctaaatttcgtactaactgctttaaggtacgagtttgatcattgtaccacggtgcgagctttttctgtctctctattttgtgtttaaggggagctacaacatctaaggtagagcgaaaggtattttctaaaccttcggttagtttgtctagttctactgggtctacaggagagtacattagagttgataagtctggaagcttatctgtaaattgttgggctgtaaaaggcgtaattgaacgttttacagagtagctaggggatgtacgtatattatgactaagatgtaatttaaatgaaataaggtaatgatctgaaattgcggaggtttgagaacaaatattcgggttatctatgctcacacccagggtcaaaactaaatccagagtatgattacagtaatgagtaggtcctgttatattttgaataataccaactgagtctaaaatcgatgtgaatgccttttttaatggatcatccaatttttcgaaatgaatgttgaagtctccaactataatcactttatcattacttactgctaagtctgtgacaaaatcactaaattcttttaaaaattctaaatagggccctggtggtctgtagatgttaattaaagaaaatgcattcttttttgtaactggattaattatactggtgtaaagaagctcaaaagaagtaaaattttcatagtgtttctgattgctaactaaggtactttggaaaagtatgcagaccccacctcctctaccggacaatctcggattgtgtatataattatagcctgcaggggtggcttcatttaatgctacatattcatttggcctaatccaggtttctgtcagacacagaacatcgaatttctgatcagttatcatttcattcaccagaactgcttttgaatttagagatctaatattaagtaaaccaatctttaggcttgaaatgttagtactacagtctggatatgattgtttaatataagttaagttatttagatttactgttttagttttttgatgtttttgtttgactcgggggacagacacagtctgaatacattggtatctaggtaacgtctctttgcagctcgcagacggtcggttaagcctctctgtctgcggcctggtcccggctctggattgtcagcagcttctaatactactctgccgactaactaaaagactatgagctatgctgcatgaaagtaaggcagcaccctcccgcatggggtggacaccatccctacctaaaagaccaggcttgccctcaaagtgtagccagttatctataaagcccacatgattttctgcacaccacttggacatccagcggttcagcgaagaaagcctgctgtaagcttcatcaccacgcctcattgggatggggccagagcagattacctcctcggacagcgtctgggcctgtttaatcacctctttaatattagccttagttacttcagactgccgcagacgaatatcattggcccctacatgaattactaccctcaaatatctcctattccctaacctaaggttgccactaatgtccggtgctctggctcccggtaaacaagtaactgttgccgctggtgcccctaaaggagtagctaatttcacgtgtcggacgatagagtctcctatcaccagagtacctttaacaggctcctcagttggtgcttcactgagcggggcaaacctgtttgacacgtgaactgggggagcgtggtgttcaggtgggctggctgtggcctttgcggtagcattagccttagcctttcgactatgccgccgagacgttacccattcgccccgctgtgagggctctaaggccggagtcgagggggtactaactctccctgagacacccggggctgctaacagtgaatcctgctgtctatcccttattaaaccccgGACGTGCAGCTCTAACTTATTCACCTTATCCACCAAGGAGCTAACTATCTCACACTTAGTACAAATACCACTATTGTTACCAGTATCGGTGGATAAGGGATCTAAGCTATACATGCCACACTCTAAACAGgtgtaaacctgagcagaagccatggagaaaaaagcactcaccttgtttcagttgaaattagaaacttacacaaacaaactgcagcagcaaacagctaatccagcaaacctgaggaaaaagtctataaaagtagactgagagtggattaataggtgtgtagagcaaagaggaagcagactaaaagtggattagtaagtgtgaagagagtaaaagagaagaaaacagagaaaagtgtagaagctgaagattaaagcaagctttcagcagcagagcagcacagcagcaaaccagcacagcagcagaccagagtagtagagagcagagcaggG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU170147 True 5132 lncRNA 0.41 2 29651024 29717342

Neighbor

gene id symbol gene type direction distance location
LOC103045779 zgc:113162,LOC108436778,LOC105889108,LOC107661621,LOC107692271,LOC107584524,LOC107736869 coding upstream 85320 29519772 ~ 29565704 (+)
LOC103036346 camkk2,LOC108437385,LOC107739694,LOC107736868 coding upstream 140794 29481968 ~ 29510230 (+)
LOC103047110 adora2a,LOC108437362 coding upstream 191468 29447770 ~ 29459556 (+)
specc1l specc1l,LOC108437337 coding upstream 232118 29390824 ~ 29418906 (+)
sptan1 sptan1 coding upstream 280525 29328927 ~ 29370499 (+)
LOC103028569 NA coding downstream 130571 29847913 ~ 29852857 (+)
slc31a2 NA coding downstream 232831 29950173 ~ 29967585 (+)
stxbp1 stxbp1,stxbp1a,LOC108437460,LOC107661518 coding downstream 335359 30052701 ~ 30129855 (+)
LOC103024747 NA coding downstream 1679229 31396571 ~ 31401554 (+)
LOC107197546 NA coding downstream 2291246 32008588 ~ 32021058 (+)
G125985 NA non-coding upstream 71349 29579253 ~ 29579675 (+)
G125976 NA non-coding upstream 135310 29515462 ~ 29515714 (+)
G125903 NA non-coding upstream 215019 29435768 ~ 29436005 (+)
G125901 NA non-coding upstream 216895 29428386 ~ 29434129 (+)
G125898 NA non-coding upstream 224700 29425931 ~ 29426324 (+)
G126010 NA non-coding downstream 6669 29724011 ~ 29724299 (+)
G126015 NA non-coding downstream 28508 29745850 ~ 29748041 (+)
G126018 NA non-coding downstream 40017 29757359 ~ 29759592 (+)
G126038 NA non-coding downstream 130489 29847831 ~ 29875639 (+)
G126046 NA non-coding downstream 187792 29905134 ~ 29905852 (+)
snrpd3 snrpd3,smd3,LOC106563120,LOC105014836 other upstream 171654 29473460 ~ 29479370 (+)
LOC111188228 specc1l,specc1la,LOC108437337,LOC107711823,LOC107667544,LOC107602822 other upstream 206346 29438754 ~ 29444678 (+)
G125687 fnip1 other upstream 665143 28984168 ~ 28985881 (+)
G125669 NA other upstream 729436 28918856 ~ 28921588 (+)
LOC103039679 NA other upstream 749010 28895071 ~ 28902014 (+)
G126011 NA other downstream 19956 29737298 ~ 29743633 (+)
G126040 LOC108436799,LOC104955091,LOC103374273,LOC100049520,LOC107397331,LOC101074260 other downstream 138696 29856038 ~ 29860217 (+)
G126613 LOC108415780 other downstream 2576022 32293364 ~ 32293744 (+)
G126632 NA other downstream 2684848 32402190 ~ 32402831 (+)
G126702 NA other downstream 3115620 32832962 ~ 32833466 (+)

Expression


Co-expression Network