LOC107197060


Basic Information

Item Value
gene id LOC107197060
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035897.1
NCBI id CM008300.1
chromosome length 26953843
location 14369213 ~ 14371084 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU4824
ACAGACTTATGGAGAACTTTACTGGAGGAAGAGTGATAGGACAGCAGCAGACAGGTCTGACTGTGGGAGTGAGTCTGCTCATTGTCTTGATGATTATTGTTCTGGCAGCTATAGTATACACTCCTCCAGGTATGAGATTCTGCAGAAGAAGAAACTTGACTGAGGAGCATCTCTCACTCACAGACAACAGAGTCTCCTGATCATTGTGGTGTCTAAATGTCCATTGATCAACCTTTGTCACTGGTTGTAATGTCTACCTCCAACATGACGACACACCATGTCACAAAGTAAAAGGTGTGTCGAACTGCCTTCCAAGACACCTCTCTGCATCCAATTGAGCATTTTTGGGATGCAGTAATAAGAGAAATTCACAGGATGAAAGCGGACCTGAACAATCTGCGGGAATTACCACCAGCTCCTTTTCTTCCAAGTCTGAAAACTGGTCAATGGAAAAATGGACAAAGCAGTAGATAACAATAGACACACACTTATTTCATCATGGTGCTTCATTATCTTTCATGATAAAATATCTGTGAAGGACACTAAGAGATCATTCTATTGAGTAATCACGACTGTCTGTGCATGACTGAACGGTTAACATACTATATTGATTCAATCGAAGAACATCTAGATGTTTAATGTGTCAGTTTTcattaaaaagcaaataaatccTGATCATCTGGATGTACTCCTACACGTTTTCTGCTGTGTTTGAAACAGCTATTAAATTGGG
>TU4825
TGTGATTCTTCACTTCCTCTCTGTGTGAGTAACAGACTTATGGAGAACTTTACTGGAGGAAGAGTGATAGGACAGCAGCAGACAGGTCTGACTGTGGGAGTGAGTCTGCTCATTGTCTTGATGATTATTGTTCTGGCAGCTATAGTATACACTCCTCCAGGTATGAGATTCTGCAGAAGAAGAAACTTGACTGAGGAGCATCTCTCACTCACAGACAACAGAGTCTCCTGATCATTGTGGTGTCTAAATGTCCATTGATCAACCTTTGTCACTGGTTGTAATGTCTACCTCCAACATGACGACACACCATGTCACAAAGTAAAAGGTGTGTCGAACTGCCTTCCAAGACACCTCTCTGCATCCAATTGAGCATTTTTGGGATGCAGTAATAAGAGAAATTCACAGGATGAAAGCGGACCTGAACAATCTGCGGGAATTACCACCAGCTCCTTTTCTTCCAAGTCTGAAAACTGGTCAATGGAAAAATGGACAAAGCAGTAGATAACAATAGACACACACTTATTTCATCATGGTGCTTCATTATCTTTCATGATAAAATATCTGTGAAGGACACTAAGAGATCATTCTATTGAGTAATCACGACTGTCTGTGCATGACTGAACGGTTAACATACTATATTGATTCAATCGAAGAACATCTAGATGTTTAATGTGTCAGTTTTcattaaaaagcaaataaatccTGATCATCTGGATGTACTCCTACACGTTTTCTGCTGTGTTTGAAACAGCTATTAAATTGGG
>XR_001518350.2
CCCCGCCCTCTCAGAAAGGCTGTCATGTGATTCTTCACTTCCTCTCTGTGTGAGTAACAGACTTATGGAGAACTTTACTGGAGGAAGAGTGATAGGACAGCAGCAGACAGGTCTGACTGTGGGAGTGAGTCTGCTCATTGTCTTGATGATTATTGTTCTGGCAGCTATAGTATACACTCCTCCAGGTATGAGATTCTGCAGAAGAAGAAACTTGACTGAGGAGCATCTCTCACTCACAGACAACAGAGTCTCCTGATCATTGTGGTGTCTAAATGTCCATTGATCAACCTTTGTCACTGGTTGTAATGTCTACCTCCAACATGACGACACACCATGTCACAAAGTAAAAGGTGTGTCGAACTGCCTTCCAAGACACCTCTCTGCATCCAATTGAGCATTTTTGGGATGCAGTAATAAGAGAAATTCACAGGATGAAAGCGGACCTGAACAATCTGCGGGAATTACCACCAGCTCCTTTTCTTCCAAGTCTGAAAACTGGTCAATGGAAAAATGGACAAAGCAGTAGATAACAATAGACACACACTTATTTCATCATGGTGCTTCATTATCTTTCATGATAAAATATCTGTGAAGGACACTAAGAGATCATTCTATTGAGTAATCACGACTGTCTGTGCATGACTGAACGGTTAACATACTATATTGATTCAATCGAAGAACATCTAGATGTTTAATGTGTCAGTTTTcattaaaaagcaaataaatccTGATCATCTGGATGTACTCCTA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU4824 False 733 lncRNA 0.50 2 14369213 14371028
TU4825 True 764 lncRNA 0.34 2 14369213 14371059
XR_001518350.2 False 750 lncRNA 0.41 2 14369252 14371084

Neighbor

gene id symbol gene type direction distance location
LOC103037230 ssh2,LOC108440358 coding downstream 4744 14331805 ~ 14364469 (-)
git1 git1,LOC107685085,LOC107669736,LOC107548582,LOC105889552,LOC106580798 coding downstream 89923 14255315 ~ 14279290 (-)
LOC103035060 LOC108440363 coding downstream 200275 14138449 ~ 14168938 (-)
LOC103025751 LOC108427003,LOC107730853,LOC107582235,LOC107683286,LOC108277959 coding downstream 618934 13734473 ~ 13750279 (-)
LOC103043894 LOC108426997,LOC107589740 coding downstream 655838 13703983 ~ 13713375 (-)
blmh blmh,LOC107743628 coding upstream 43170 14414254 ~ 14435382 (-)
LOC103039849 cd3eap coding upstream 146851 14517935 ~ 14520858 (-)
LOC103040167 gpr4,LOC108278409,LOC107743733,LOC107669721,LOC107548551 coding upstream 169323 14540407 ~ 14577509 (-)
LOC103040481 eml2,LOC108277999,LOC107685092,LOC107669753 coding upstream 221941 14593025 ~ 14630713 (-)
LOC103041915 NA coding upstream 341234 14712318 ~ 14720394 (-)
G3621 NA non-coding downstream 6141 14362000 ~ 14363072 (-)
LOC111190296 NA non-coding downstream 50316 14281032 ~ 14318897 (-)
G3610 NA non-coding downstream 121354 14247642 ~ 14247859 (-)
G3469 NA non-coding downstream 648188 13680519 ~ 13721025 (-)
G3474 NA non-coding downstream 677331 13689761 ~ 13691882 (-)
LOC111190767 NA non-coding upstream 66587 14437671 ~ 14513968 (-)
G3631 NA non-coding upstream 103001 14474085 ~ 14475176 (-)
G3668 NA non-coding upstream 162659 14533743 ~ 14790620 (-)
G3697 NA non-coding upstream 365746 14736830 ~ 14737158 (-)
G3699 NA non-coding upstream 379034 14750118 ~ 14753636 (-)
G3612 NA other downstream 84988 14283623 ~ 14284225 (-)
LOC111189390 NA other downstream 235976 14124173 ~ 14133237 (-)
slc43a2 slc43a2,LOC107685082,LOC107548581,LOC107589710 other downstream 796841 13544500 ~ 13572372 (-)
LOC111197384 NA other downstream 1233572 13130212 ~ 13135641 (-)
sgcg sgcg other downstream 1588048 12759066 ~ 12781165 (-)
slc6a4 slc6a4,slc6a4a,LOC107743629,LOC107669739,LOC107548586,LOC107756784,LOC107589714,LOC107685089 other upstream 9671 14380755 ~ 14471752 (-)
LOC103022652 LOC103022652,LOC108425821,LOC108277503 other upstream 1906921 16278005 ~ 16282632 (-)
ercc2 ercc2,LOC107743694,LOC107601732 other upstream 2273408 16644492 ~ 16653968 (-)
LOC103040336 mpzl2 other upstream 3612801 17983885 ~ 17998749 (-)
G4621 NA other upstream 3659278 18030362 ~ 18040766 (-)

Expression


Co-expression Network