G3699


Basic Information

Item Value
gene id G3699
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035897.1
NCBI id CM008300.1
chromosome length 26953843
location 14750118 ~ 14753636 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU4948
TTTACGAAACAtcaaatgtttattattgttatatccATTATTCAGAGAAGAATTCTTAAGTTTATGGGGATTAACATGCTATTACAcagctgaaaaaagaaaagcactgttgttgtttttttatatataaagacaGCATGCAGTAGCCTAGTTAGCTAAACAGAACTGACTCCAGCATTTACAGTCCTCACAAATCTTTCTTACAGAAGATAGAAGTTCACATGAATACACAAACATGGATATTGTCACCAGGTTGTCCGACTGAtgcacattaaaaaatacacagtaaaattattaaaatatatcttttCGGACGAAGAAATGTTTACAAATTATATGTTTACAAATTAATCATACCAAATAAGCTACACAACTGGGTAGACTAAGAGAATTAACTAAGTAACTTTACGTAAAAtgcctgtgttttattttgatcTGATACGGAGAGGGGAACGTATAGGGGACAAGACAGTGAGAGATAGTAAATACACTCTGTAATTACAGTTAAAATATCTCACCCACTTTCTCTTTTGCCATTCACTGAAATGAAATGTGATCAGAACAGAAGTGGctgtgaaatgaaatgaaagtgaTCTTGTGTAACAGCTTAAAAAGTCAccctaaaacaataaaaaacaaaccgTCAGATTCCACAAAACTCAACGATTATGTTTACTACTGGTTATACGTTATGGTTTAAGTTTTGCACTCAGTCTTAAATGCCTTTTACTCGTCTTAGTCTTATATCACTACAGAGGCAATGATTGCACCACTACACAAATTCAACAATATATGAATAACTAACTAGCAGTATGTagacttaaaaaacaaaacatacagaTCTGTTACGCAGTAGGTGTTCATTTTTTCCATTCTCCTTGTTCTGCAGTGCTCGTCAGGGTGCTCCCAGAAAAGGTGTTACACAGAGTGCACAAGCAATGcctgatgtttttttcttgctCACAGTCTGCCAATAGCTGCATCCCTAGGATCAGGCAGTTAATGTCCCCTAATCCTGCCTGTGATAAAGGAAGGTATAGTTAAGAGAACTGAGTCTAAAGCAGCTTAAATCAGTGAGGGGAAAGTAGCAGAAAGTGACTGGAGCTTTTCTTACGCATGCTGTGTGCTAGACAAAGACACCACCCATATTCACATAGCAAGTTGACGTAGATTAGATATTgctctttttcttcatttttacactTGTTGACAGATATAATCACATACTTTTCTGACTATTGGAGCTGCTGAAGTCGATCATTTACAAAAACCTATTTAAACTGAAACGAGATACAGGAAAAGAGGAGGATCAGGCAGAGGAACACGGCAGGAATTGAACTGTATTTTAGATAATATCAAGGACTTGCTGGATGACCTGGGTAATGGCTACAttatatttaagtgtgtttttaaaactttcaCCTAACAAGTATCTGATGCTACTGTCACTGAATTACAACAGCTGAAATATACCGTCAGATTTACTGCCAATTTATCATTAGGTGGACTAGTTTAAGTATATGTGTTCCCATTGGGCAGCTAAATATTAACCAGGACCTTTActgatataaacattttttttgacaCTGATACCAATATTAGGGGCTAAAAACTGGTAATGAACAGTATTAGCCAATAATTATTGCCAAGCGATCATTAACAatttttattacataacatgACATGGTTACCTGTTTATAACTGTCATGCttctttaactcaaataaactgCAAAACCCATGATCTTAAAGCAACATTACAAAGCATTTTATATcataaaacagctttaaaagtGTGGACATCAACACACATCATCATATGTAAATTTAGTGAAGCTCACCATGACTAAATAATGCTGCCTAACCCAAatcttttttgtgtaaaatcctgtaacaTTACTGTACTGGATGAGTTCCTTATTTCTCAGCTtgcccagaaatgcatgtgtaaagcatgtcctttaGGATGACTTACTGACTGCAGGGGGAACCCAGGAGTAAACTTTTTGCATActactgttttaaataataaaaataaaatagcatatgGTTGTCactcaaaatgtttttgtgtaTCGTTATCATCTTtaacttcttttattttttttgtcattaattCTCTCAAAAAGGACACATTTGACATGGATTATCACTCGTCATGACAGCATTCTGTGTTTAGTTTCCTCATTCAGCTTGTATCACTAATATAGTTATATATGGAGGGTGTGTACAACTCTGTTTAGCTTTAATCCTGGTGGGTCTGTTATTATTGGTGATATTTTAAAGGATACAGATAAAGCCACATCAatattatttgatatatttgtaAACCCATATATCGGTCAGATTATAGTATGAACAATGGCACAAAATCCCatgattattatataaatcttGAATATTTTCTGACAATGTACTAAGGGTAATGTACAGCCTCACATAGAGTATGTCCACCCACATgtacacactgttactgtaCACATGCCTGCACAGTAGATACAGGTCAATACAGGTATGATCCACTGAACTGCACTGGGAACGACAATTAAAAGTGAGATATAAACAATAAACCCtgtattctttttttccctGTCACCCTGGTAGCTTAAACGTATGTAAAGGTAATCTGCATTTTTTCTTACCACAATATGATTAAATGATCGGGTAGTTGCAAGGTTCTTGGACAACATCTTTTAGACAGACATTAACCATCTAAATATGATCAAGTACTCAGAAAACTAAtgaaaaggcatttaaaagctTAGTTCCCTATTCAATACTGAAAATAAGACAAGAGTGCACActctagcagcagcagcagccatgaTATATTTTAGGCtaagattcagaaactgtgtttttctaaaacaaaaacacacacatgcaaagcCCACAAAAACATTTACTGGTATGTTTTTGTGGCTTTCATTTTAGGGTGATTTTCAACAACATAAAAGACACCTTAACTTAAAAAATCGGTTATGTTCCAACAAATGGCTTTTGTCAGGGTTATGTTGCCCTAATTAAGAATTCAAGAAACAtcttttcattattattgttcGTTTAACAAATGGAATGCAGGACGTTAGTTACTTTACAAGGCACTAGTTTTTGCTAACTGCAGTCAAAGGGGAAGGTTTGGAGACGGGGGTCACCACAGTTGTGCCTTCGACAATCTGTGGGATTTTTAGAGAAAAGCACAAATGAAGGATGGAAAGACAGTGAGAGGAtccttttgttgtttttggggAGGAACAGAAAGATGGGTTAGGAGAAGTAGTGAGCCAAACGTTTAGGATTGCATTTCCGCACGGAGCATCCAAGGGAACCAGCAACAGAACAGCAACCTgctgaTAAAGAGCTCTCGGATGTGATGTCTTTGGGAGACCTCACCGCATTGAAGTTCCGTTTCGGCTGGGCCA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU4948 True 3421 lncRNA 0.36 2 14750118 14753636

Neighbor

gene id symbol gene type direction distance location
LOC103041915 NA coding downstream 29724 14712318 ~ 14720394 (-)
LOC103040481 eml2,LOC108277999,LOC107685092,LOC107669753 coding downstream 119405 14593025 ~ 14630713 (-)
LOC103040167 gpr4,LOC108278409,LOC107743733,LOC107669721,LOC107548551 coding downstream 172609 14540407 ~ 14577509 (-)
LOC103039849 cd3eap coding downstream 229260 14517935 ~ 14520858 (-)
blmh blmh,LOC107743628 coding downstream 314736 14414254 ~ 14435382 (-)
LOC111192841 NA coding upstream 274 14753910 ~ 14755778 (-)
LOC103043873 tmem87a,LOC108425916 coding upstream 68890 14822526 ~ 14837246 (-)
LOC103045693 LOC108425804,LOC107683437,LOC107588342,LOC107757408,LOC107672102,LOC105010786 coding upstream 127062 14880698 ~ 14884064 (-)
LOC103023234 omg coding upstream 361989 15115625 ~ 15120654 (-)
evi2b NA coding upstream 373112 15126748 ~ 15131139 (-)
G3697 NA non-coding downstream 12960 14736830 ~ 14737158 (-)
LOC111190767 NA non-coding downstream 236150 14437671 ~ 14513968 (-)
G3631 NA non-coding downstream 274942 14474085 ~ 14475176 (-)
LOC107197060 NA non-coding downstream 379034 14369213 ~ 14371084 (-)
G3621 NA non-coding downstream 387046 14362000 ~ 14363072 (-)
G3717 NA non-coding upstream 60784 14814420 ~ 14814633 (-)
G3745 LOC108425806,LOC107700232,LOC107548486,LOC107655908 non-coding upstream 86643 14840279 ~ 14845627 (-)
G3756 vezf1b,LOC108425912,LOC108278304,LOC108435808 non-coding upstream 146912 14900548 ~ 14982513 (-)
G3767 wsb1,LOC107746651,LOC107756317 non-coding upstream 166181 14919817 ~ 14945445 (-)
G3775 NA non-coding upstream 206880 14960516 ~ 14960939 (-)
slc6a4 slc6a4,slc6a4a,LOC107743629,LOC107669739,LOC107548586,LOC107756784,LOC107589714,LOC107685089 other downstream 278366 14380755 ~ 14471752 (-)
G3612 NA other downstream 465893 14283623 ~ 14284225 (-)
LOC111189390 NA other downstream 616881 14124173 ~ 14133237 (-)
slc43a2 slc43a2,LOC107685082,LOC107548581,LOC107589710 other downstream 1177746 13544500 ~ 13572372 (-)
LOC111197384 NA other downstream 1614477 13130212 ~ 13135641 (-)
LOC103022652 LOC103022652,LOC108425821,LOC108277503 other upstream 1524369 16278005 ~ 16282632 (-)
ercc2 ercc2,LOC107743694,LOC107601732 other upstream 1890856 16644492 ~ 16653968 (-)
LOC103040336 mpzl2 other upstream 3230249 17983885 ~ 17998749 (-)
G4621 NA other upstream 3276726 18030362 ~ 18040766 (-)
LOC103031959 NA other upstream 3442944 18196580 ~ 18226004 (-)

Expression


Co-expression Network