RNA id: TU4948


Basic Information

Item Value
RNA id TU4948
length 3421
lncRNA type inter_gene
GC content 0.36
exon number 2
gene id G3699
representative True

Chromosome Information

Item Value
chromosome id NC_035897.1
NCBI id CM008300.1
chromosome length 26953843
location 14750118 ~ 14753636 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

TTTACGAAACAtcaaatgtttattattgttatatccATTATTCAGAGAAGAATTCTTAAGTTTATGGGGATTAACATGCTATTACAcagctgaaaaaagaaaagcactgttgttgtttttttatatataaagacaGCATGCAGTAGCCTAGTTAGCTAAACAGAACTGACTCCAGCATTTACAGTCCTCACAAATCTTTCTTACAGAAGATAGAAGTTCACATGAATACACAAACATGGATATTGTCACCAGGTTGTCCGACTGAtgcacattaaaaaatacacagtaaaattattaaaatatatcttttCGGACGAAGAAATGTTTACAAATTATATGTTTACAAATTAATCATACCAAATAAGCTACACAACTGGGTAGACTAAGAGAATTAACTAAGTAACTTTACGTAAAAtgcctgtgttttattttgatcTGATACGGAGAGGGGAACGTATAGGGGACAAGACAGTGAGAGATAGTAAATACACTCTGTAATTACAGTTAAAATATCTCACCCACTTTCTCTTTTGCCATTCACTGAAATGAAATGTGATCAGAACAGAAGTGGctgtgaaatgaaatgaaagtgaTCTTGTGTAACAGCTTAAAAAGTCAccctaaaacaataaaaaacaaaccgTCAGATTCCACAAAACTCAACGATTATGTTTACTACTGGTTATACGTTATGGTTTAAGTTTTGCACTCAGTCTTAAATGCCTTTTACTCGTCTTAGTCTTATATCACTACAGAGGCAATGATTGCACCACTACACAAATTCAACAATATATGAATAACTAACTAGCAGTATGTagacttaaaaaacaaaacatacagaTCTGTTACGCAGTAGGTGTTCATTTTTTCCATTCTCCTTGTTCTGCAGTGCTCGTCAGGGTGCTCCCAGAAAAGGTGTTACACAGAGTGCACAAGCAATGcctgatgtttttttcttgctCACAGTCTGCCAATAGCTGCATCCCTAGGATCAGGCAGTTAATGTCCCCTAATCCTGCCTGTGATAAAGGAAGGTATAGTTAAGAGAACTGAGTCTAAAGCAGCTTAAATCAGTGAGGGGAAAGTAGCAGAAAGTGACTGGAGCTTTTCTTACGCATGCTGTGTGCTAGACAAAGACACCACCCATATTCACATAGCAAGTTGACGTAGATTAGATATTgctctttttcttcatttttacactTGTTGACAGATATAATCACATACTTTTCTGACTATTGGAGCTGCTGAAGTCGATCATTTACAAAAACCTATTTAAACTGAAACGAGATACAGGAAAAGAGGAGGATCAGGCAGAGGAACACGGCAGGAATTGAACTGTATTTTAGATAATATCAAGGACTTGCTGGATGACCTGGGTAATGGCTACAttatatttaagtgtgtttttaaaactttcaCCTAACAAGTATCTGATGCTACTGTCACTGAATTACAACAGCTGAAATATACCGTCAGATTTACTGCCAATTTATCATTAGGTGGACTAGTTTAAGTATATGTGTTCCCATTGGGCAGCTAAATATTAACCAGGACCTTTActgatataaacattttttttgacaCTGATACCAATATTAGGGGCTAAAAACTGGTAATGAACAGTATTAGCCAATAATTATTGCCAAGCGATCATTAACAatttttattacataacatgACATGGTTACCTGTTTATAACTGTCATGCttctttaactcaaataaactgCAAAACCCATGATCTTAAAGCAACATTACAAAGCATTTTATATcataaaacagctttaaaagtGTGGACATCAACACACATCATCATATGTAAATTTAGTGAAGCTCACCATGACTAAATAATGCTGCCTAACCCAAatcttttttgtgtaaaatcctgtaacaTTACTGTACTGGATGAGTTCCTTATTTCTCAGCTtgcccagaaatgcatgtgtaaagcatgtcctttaGGATGACTTACTGACTGCAGGGGGAACCCAGGAGTAAACTTTTTGCATActactgttttaaataataaaaataaaatagcatatgGTTGTCactcaaaatgtttttgtgtaTCGTTATCATCTTtaacttcttttattttttttgtcattaattCTCTCAAAAAGGACACATTTGACATGGATTATCACTCGTCATGACAGCATTCTGTGTTTAGTTTCCTCATTCAGCTTGTATCACTAATATAGTTATATATGGAGGGTGTGTACAACTCTGTTTAGCTTTAATCCTGGTGGGTCTGTTATTATTGGTGATATTTTAAAGGATACAGATAAAGCCACATCAatattatttgatatatttgtaAACCCATATATCGGTCAGATTATAGTATGAACAATGGCACAAAATCCCatgattattatataaatcttGAATATTTTCTGACAATGTACTAAGGGTAATGTACAGCCTCACATAGAGTATGTCCACCCACATgtacacactgttactgtaCACATGCCTGCACAGTAGATACAGGTCAATACAGGTATGATCCACTGAACTGCACTGGGAACGACAATTAAAAGTGAGATATAAACAATAAACCCtgtattctttttttccctGTCACCCTGGTAGCTTAAACGTATGTAAAGGTAATCTGCATTTTTTCTTACCACAATATGATTAAATGATCGGGTAGTTGCAAGGTTCTTGGACAACATCTTTTAGACAGACATTAACCATCTAAATATGATCAAGTACTCAGAAAACTAAtgaaaaggcatttaaaagctTAGTTCCCTATTCAATACTGAAAATAAGACAAGAGTGCACActctagcagcagcagcagccatgaTATATTTTAGGCtaagattcagaaactgtgtttttctaaaacaaaaacacacacatgcaaagcCCACAAAAACATTTACTGGTATGTTTTTGTGGCTTTCATTTTAGGGTGATTTTCAACAACATAAAAGACACCTTAACTTAAAAAATCGGTTATGTTCCAACAAATGGCTTTTGTCAGGGTTATGTTGCCCTAATTAAGAATTCAAGAAACAtcttttcattattattgttcGTTTAACAAATGGAATGCAGGACGTTAGTTACTTTACAAGGCACTAGTTTTTGCTAACTGCAGTCAAAGGGGAAGGTTTGGAGACGGGGGTCACCACAGTTGTGCCTTCGACAATCTGTGGGATTTTTAGAGAAAAGCACAAATGAAGGATGGAAAGACAGTGAGAGGAtccttttgttgtttttggggAGGAACAGAAAGATGGGTTAGGAGAAGTAGTGAGCCAAACGTTTAGGATTGCATTTCCGCACGGAGCATCCAAGGGAACCAGCAACAGAACAGCAACCTgctgaTAAAGAGCTCTCGGATGTGATGTCTTTGGGAGACCTCACCGCATTGAAGTTCCGTTTCGGCTGGGCCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU4946 lncRNA downstream 12960 14736830 ~ 14737158 (-) True G3697
XR_002649204.1 lncRNA downstream 236150 14437673 ~ 14513968 (-) False LOC111190767
XR_002649210.1 lncRNA downstream 236156 14437675 ~ 14513962 (-) False LOC111190767
TU4835 lncRNA downstream 236187 14437680 ~ 14513931 (-) False LOC111190767
XR_002649220.1 lncRNA downstream 236312 14437671 ~ 14513806 (-) True LOC111190767
TU4967 lncRNA upstream 60784 14814420 ~ 14814633 (-) True G3717
TU5017 lncRNA upstream 86643 14840279 ~ 14845627 (-) True G3745
TU5015 lncRNA upstream 88315 14841951 ~ 14845627 (-) False G3745
TU5040 lncRNA upstream 146912 14900548 ~ 14955349 (-) False G3756
TU5041 lncRNA upstream 146912 14900548 ~ 14955349 (-) True G3756
XM_007236833.3 mRNA downstream 29724 14712318 ~ 14720394 (-) True LOC103041915
XM_022664818.1 mRNA downstream 119405 14593970 ~ 14630713 (-) False LOC103040481
XM_007236829.3 mRNA downstream 126571 14593025 ~ 14623547 (-) False LOC103040481
XM_022671130.1 mRNA upstream 274 14753910 ~ 14755778 (-) True LOC111192841
XM_022666007.1 mRNA upstream 68890 14822526 ~ 14837246 (-) True LOC103043873
XM_007236847.2 mRNA upstream 127062 14880698 ~ 14884064 (-) True LOC103045693
XM_007236861.3 mRNA upstream 361989 15115625 ~ 15120654 (-) True LOC103023234
XM_007236860.3 mRNA upstream 373112 15126748 ~ 15131139 (-) True evi2b
TU4805 other downstream 465893 14283623 ~ 14284225 (-) True G3612
XR_002648804.1 other downstream 617582 14124782 ~ 14132536 (-) False LOC111189390
trnae-uuc other upstream 281379 15035015 ~ 15035086 (-) True trnae-uuc
TU5685 other upstream 1524371 16278007 ~ 16282630 (-) False LOC103022652
XR_002649862.1 other upstream 1890916 16644552 ~ 16653968 (-) False ercc2
TU6059 other upstream 3230249 17983885 ~ 17998736 (-) True LOC103040336
TU6226 other upstream 3276726 18030362 ~ 18040766 (-) True G4621

Expression Profile