G3745 (LOC108425806,LOC107700232,LOC107548486,LOC107655908)


Basic Information

Item Value
gene id G3745
gene name LOC108425806,LOC107700232,LOC107548486,LOC107655908
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035897.1
NCBI id CM008300.1
chromosome length 26953843
location 14840279 ~ 14845627 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU5015
GTGACGTAAActgttttattacacatttttgcAAAACACAAGACATGGGAATGTTTACTAGAGTCTGTGCCAAAACAGTATAATCTACTGGGTGAGGcctaatttaattacaatattactgaattaCCAAATTAAATTAGGGTGCAACGTATTGTGGTAATGAGGTGCAGCAAACTTCATTATGACTCAATATAATGACTCCACAGAGTTCTACTGCTGCTCGAATTCAGCTCTAACCTACAACTGAGAgtccctatatatatatatatatatatatatatatatatatatatatatatatat
>TU5017
GTGACGTAAActgttttattacacatttttgcAAAACACAAGACATGGGAATGTTTACTAGAGTCTGTGCCAAAACAGTATAATCTACTGGGTGAGGcctaatttaattacaatattactgaattaCCAAATTAAATTAGGGTGCAACGTATTGTGGTAATGAGGTGCAGCAAACTTCATTATGACTCAATATAATGACTCCACAGAGTTCTACTGCTGCTCGAATTCAGCTCTAACCTACAACTGAGAgtcccatatatatataagcacatCTTAAACACAAAGCTACATGATACTGCATAATCTGAACTATTTATTtggtaataaaaacacagaatctagTGTAAAGATGGGAAACGGAACTGTACAGGGTCGATTCCTCTTGATTTAGGAGTACATCGTCAGCTGCAGCCACTGAGAatagaaagtgagaaaaaattATACACAACCTCTCATTTTAGCACTGTTTGATTTAAGTTTAGTAAGATCTACTGTTGCTAATGGCAACAGATATTTCTGGgactatttaaatatagctcTCATACCTCTTTGATGTTGACTTTGATTGTACCGTTGTTGTCACTGTCCAGCGTTTTAAATGCACCTGTTTATGTTcattcataaatatattttacatatagttATAGTTACATATAGTTGAGTCCAGAAAATTTTACGAATATGTGACTACAAGTAAAGAAAACTTACGACACATTGCATCCAGTCGCACCAGACACCCAATGAAGTTATCAAAGTCCATGTTGCCACTTTCATCACTGTATCTGCGAATGATCATCTTGAAGAGCTGGTCATTTAGGGGAAACCCTGCTGCTCTGAATGCAGCTGGCAACTCATCAGCCCCAATTGTCCCAGAACAGTCAGCATCATGTGACTTATAGACGCCCTGCCACTTCTTGATATTGTTCCACAAGTACTTGAACTCATGAAAGCCCAACTTTCCAGAGCTATCACCATCCATTACTGCCACCATGCTCCTGCAAGACTCGATTGTGAAACCATCAGTCTTCATGTCTTGATGTTTGGTCAGAATCTTATTGAGAATGTTCATCAGCTCACTAGGACTCACTTCCATGTCATCTCCAGCAAGCTGCTGAAAAACTTTGCGAAACTGCGTTTCCTCAGCACTTTCATTTTGCGCAGCATTGGCGTTTACGAGTGGTCTTCTGGCAGGAGGTGGTTCTGAAGAACCAAACTGACTAGGATCAATATTGCTCACAACGTCGATAATCCCTCCTATGAATTTTTTGGCCAAAAACATGGTGGTTGTGAAGATGAAGGCACAGCTCTACAAGTTAGATCAGAGGAATGGTTAAATCTCCAGTTGAAAAGCACATGCAGACAAAAAGGGAGGGGATGAAGTGTTTTAACTACAGCTCTCACTACAAAAGCCTGCTCTACCACTCCACTGAGCAAACTTGATCATTACAGCCCTCCCCG

Function

NR:

description
PREDICTED: calpain small subunit 1-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU5015 False 303 lncRNA 0.37 2 14841951 14845627
TU5017 True 1458 lncRNA 0.40 9 14840279 14845627

Neighbor

gene id symbol gene type direction distance location
LOC103043873 tmem87a,LOC108425916 coding downstream 3033 14822526 ~ 14837246 (-)
LOC111192841 NA coding downstream 84501 14753910 ~ 14755778 (-)
LOC103041915 NA coding downstream 119885 14712318 ~ 14720394 (-)
LOC103040481 eml2,LOC108277999,LOC107685092,LOC107669753 coding downstream 209566 14593025 ~ 14630713 (-)
LOC103040167 gpr4,LOC108278409,LOC107743733,LOC107669721,LOC107548551 coding downstream 262770 14540407 ~ 14577509 (-)
LOC103045693 LOC108425804,LOC107683437,LOC107588342,LOC107757408,LOC107672102,LOC105010786 coding upstream 35071 14880698 ~ 14884064 (-)
LOC103023234 omg coding upstream 269998 15115625 ~ 15120654 (-)
evi2b NA coding upstream 281121 15126748 ~ 15131139 (-)
LOC103024177 abcg4b,abcg4,LOC108439979,LOC107585553,LOC107683844,LOC104937503 coding upstream 825464 15671091 ~ 15694631 (-)
usf1 usf1,LOC107657261,LOC107601709 coding upstream 854377 15700004 ~ 15705950 (-)
G3717 NA non-coding downstream 25646 14814420 ~ 14814633 (-)
G3668 NA non-coding downstream 49659 14533743 ~ 14790620 (-)
G3699 NA non-coding downstream 86643 14750118 ~ 14753636 (-)
G3697 NA non-coding downstream 103121 14736830 ~ 14737158 (-)
LOC111190767 NA non-coding downstream 326311 14437671 ~ 14513968 (-)
G3756 vezf1b,LOC108425912,LOC108278304,LOC108435808 non-coding upstream 54921 14900548 ~ 14982513 (-)
G3767 wsb1,LOC107746651,LOC107756317 non-coding upstream 74190 14919817 ~ 14945445 (-)
G3775 NA non-coding upstream 114889 14960516 ~ 14960939 (-)
G3785 NA non-coding upstream 170677 15016304 ~ 15018200 (-)
LOC111191520 NA non-coding upstream 187544 15033171 ~ 15034749 (-)
slc6a4 slc6a4,slc6a4a,LOC107743629,LOC107669739,LOC107548586,LOC107756784,LOC107589714,LOC107685089 other downstream 368527 14380755 ~ 14471752 (-)
G3612 NA other downstream 556054 14283623 ~ 14284225 (-)
LOC111189390 NA other downstream 707042 14124173 ~ 14133237 (-)
slc43a2 slc43a2,LOC107685082,LOC107548581,LOC107589710 other downstream 1267907 13544500 ~ 13572372 (-)
LOC111197384 NA other downstream 1704638 13130212 ~ 13135641 (-)
LOC103022652 LOC103022652,LOC108425821,LOC108277503 other upstream 1432378 16278005 ~ 16282632 (-)
ercc2 ercc2,LOC107743694,LOC107601732 other upstream 1798865 16644492 ~ 16653968 (-)
LOC103040336 mpzl2 other upstream 3138258 17983885 ~ 17998749 (-)
G4621 NA other upstream 3184735 18030362 ~ 18040766 (-)
LOC103031959 NA other upstream 3350953 18196580 ~ 18226004 (-)

Expression


Co-expression Network