LOC107197064


Basic Information

Item Value
gene id LOC107197064
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035897.1
NCBI id CM008300.1
chromosome length 26953843
location 15587306 ~ 15629722 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU5393
CGACCACCTCCCACAGCTGATCATCATCACAGCACAACATCACTCTCTGCACGAGCACCTGAAGAAAAAGCCTGCTGGAGTCATGTTCACTACTAGCTCACAACAGAGCCCTGTCCTACACCCAAAAAAGCCAATCATTTGACTGGTTACACAGCAAGTAAACAGAGGACCGTGGACCTGCTAGAAGTCCTTGTAGGGGTGTGCGTGTGGTGCATATGTATGGGTGCTGCTGCCCAGGCAGAGGGAGTAGACACCACCGACCACTGAAAACATCTACATTCATCTCTACCAAGACCTCTACTAGCATGCAGACAAGTCCGAGTCACAACAGGTCTGGAAACAGGCATAGGAAAGGAGAAGAAGTTAAAGTAGATGTGAAGAAATGGTAGAAAAATGCAACATTGAAGGGAAAACAGGACCTGAACTCAAGATAAATAATAGAtctgcattaatttatttagaaagCAGGGCTAGCCTGTTGGAGTGTGGAAGGCTCAGAAAAGAACAATAAGTACGAACAGATGAAATGTGGGCGGATAATTTCAAACAAGGGAAACGAGAGGTGCTAGTAAGAGGAAGAATTTGTAATGCGACATGAAAAGgaataaaggaaacaaattGGAGAAGAGATGAAAAAAAGTAGCGAAGAAAGAAGAAGGTGATGGTGGGTCATGGAGAGGAGGCGGAGAGGGGGGGTGGGACAAACCTGCCTGTGGAGAGCAAGCAGAGAAGAGTGTGGAAAGAGCGCAAGTCCTAGTGCCTCAAACTCACAGACCCTGGCTTTCAGAGACAACAGAGACATGACCAGCAGGTCAACGTCCATTAAAACACTAATCGCACAGATTTAGTGTAGATTTTACAGTGAGGATGAAGCCCCGTCTTAGTCTTGACCTCACTTGGACTCTGCATCGTCTCAGCCTCAGGGAGAGGATGACCAGCCGAGACCACTGCATCTGTCTGAAGTAATATTAATCAGAAACTAAACTTATTTTTAGCATTATTAAATCCATTCAAATCAAACA
>XR_001518353.2
gtgtgtgtgtgtgtgtaagtgtgtaaataaaaggctaggtgctagactagtactgtctgtatgtgtatcagctaaTTAAGTATCTGTATCAGCttaataatatactatatagtaTTTCCAATACTGAGTTTTCTATAAAGATTTTCACTATTTAAATGTAGATGTAGAGCGCAGCTGTGGGAGGTATTGttcataaaattatataaaatgtggGCCTGTTTTATCTTATCTCTGCTGAGAGAATGTTTAAAATAAGGGTAACACACCTCTCCCCTGTGcattatatgtaaatgtaaatgtaaatgatcttGTTTCGTCTGATATGTCACACTCACCTGTCCTGGGAACACCTCAatttcatttacagtgttttttttatttatttgttttcttttatagaAAGGTCAGTGGGGCTGGATCCATTGGATATTTAGCACCTCTAAACCTCCGATATGAGATTCGCTCCTGGGCAACatcatgccatagagggttaacatctaaaaaatgtgtttttttgtgaaaagttAATCTTTGAATATAAGTGTACAGTCACATTAAATCTTTAAACCGTGAAAGCACCAAACTCCAGTAGTCAAATACATATAGTGTGTGCACatataatgataaaaacaatatctatatatctactGGCTTTAGTTACACAGAACCACACTGTGTTCAGCATGTTCATTCTGGGTTCTGAGGAGTATCTAGTGGAGAAGCTTGGATGCAGAACATACAGCACAcagtcacaaacacacacacacacacacacatgcatgcatgcattagTGTTTATAGCATGCAAAAACAACTCTTTGGGTGGCCATCCACCCAAACACACAGCTGGTTTACTAAAACTGCACAGCTCTGTTGCTTTCTCAGAGAGCACATTTTATTCTgtgaaactaaaatataaaatatgaaaattaataacatttaatggctatgttcacattacaagcctcaTTAATCAGtgcagattttttgctcagattggatttggctttcacattaataaatgtacgtgacctgtatctgtctaCACATTGATACGTTTATGCAAAGCTGCTGCAGAGTCATTAGCAATGAAGAGAGCGAGCGGTCACTGCTTGAATATTACTGACAGTATTTGTAACGCTTACCATGGTGTGTGTTCACAGACAGAGCCCTGTCCTACACCCAAAAAAGCCAATCATTTGACTGGTTACACAGCAAGTAAACAGAGGACCGTGGACCTGCTAGAAGTCCTTGTAGGGGTGTGCGTGTGGTGCATATGTATGGGTGCTGCTGCCCAGGCAGAGGGAGTAGACACCACCGACCACTGAAtaactaaATGACAGAAAATGCCATCATCTACTTCATCTACAGAACATCTACATTCATCTCTACCAAGACCTCTACTAGCATGCAGACAAGTCCGAGTCACAACAGGTCTGGAAACAGGCATAGGAAAGGAGAAGAAGTTAAAGTAGATGTGAAGAAATGGTAGAAAAATGCAACATTGAAGGGAAAACAGGACCTGAACTCAAGATAAATAATAGAtctgcattaatttatttagaaagCAGGGCTAGCCTGTTGGAGTG
>XR_002649761.1
gtgtgtgtgtgtgtgtaagtgtgtaaataaaaggctaggtgctagactagtactgtctgtatgtgtatcagctaaTTAAGTATCTGTATCAGCttaataatatactatatagtaTTTCCAATACTGAGTTTTCTATAAAGATTTTCACTATTTAAATGTAGATGTAGAGCGCAGCTGTGGGAGGTATTGttcataaaattatataaaatgtggGCCTGTTTTATCTTATCTCTGCTGAGAGAATGTTTAAAATAAGGGTAACACACCTCTCCCCTGTGcattatatgtaaatgtaaatgtaaatgatcttGTTTCGTCTGATATGTCACACTCACCTGTCCTGGGAACACCTCAatttcatttacagtgttttttttatttatttgttttcttttatagaAAGGTCAGTGGGGCTGGATCCATTGGATATTTAGCACCTCTAAACCTCCGATATGAGATTCGCTCCTGGGCAACatcatgccatagagggttaacatctaaaaaatgtgtttttttgtgaaaagttAATCTTTGAATATAAGTGTACAGTCACATTAAATCTTTAAACCGTGAAAGCACCAAACTCCAGTAGTCAAATACATATAGTGTGTGCACatataatgataaaaacaatatctatatatctactGGCTTTAGTTACACAGAACCACACTGTGTTCAGCATGTTCATTCTGGGTTCTGAGGAGTATCTAGTGGAGAAGCTTGGATGCAGAACATACAGCACAcagtcacaaacacacacacacacacacacatgcatgcatgcattagTGTTTATAGCATGCAAAAACAACTCTTTGGGTGGCCATCCACCCAAACACACAGCTGGTTTACTAAAACTGCACAGCTCTGTTGCTTTCTCAGAGAGCACATTTTATTCTgtgaaactaaaatataaaatatgaaaattaataacatttaatggctatgttcacattacaagcctcaTTAATCAGtgcagattttttgctcagattggatttggctttcacattaataaatgtacgtgacctgtatctgtctaCACATTGATACGTTTATGCAAAGCTGCTGCAGAGTCATTAGCAATGAAGAGAGCGAGCGGTCACTGCTTGAATATTACTGACAGTATTTGTAACGCTTACCATGGTGTGTGTTCACAGACAGAGCCCTGTCCTACACCCAAAAAAGCCAATCATTTGACTGGTTACACAGCAAGTAAACAGAGGACCGTGGACCTGCTAGAAGTCCTTGTAGGGGTGTGCGTGTGGTGCATATGTATGGGTGCTGCTGCCCAGGCAGAGGGAGTAGACACCACCGACCACTGAAATGGAGGAGAGAAGTGGACAGCTCGCGGTGAGatggaaaaaaacacatccGTCTTCATCAGGAGGGATGACAGACGACTATGAGGTGTGTTTCATATTTGCGTCTCGTGCGGCTGGCGCTGAAGACGCTGGCTGGATGGCGTGCACCTGCGGTTGGCTTGCGCAGGACAGAGCAGGCAGGGCATGCGCAGCTGCGGACCACCGCCTGTCTGCGTACAGCACCTAATGGAGAGTGACACTAGCTCTCTGTGCTGCCTGCCTGAGAcagacactcactcactcactcacactcttcCTTAGTGTAGCTCAGTGTAGCTCAACCTGATAACAGAAGAGCTGAGTGGAGaacttaaatgtatatttttaaatgtgctacttTATTTGGGCCAATCAGAAAAGGACATTGTTTTTGATtactgggatttgtgtgggaaAGCACAAACAACAAGTAAGAAACTAGTatcttgtcccatgacttttgccacattccCTGGAAGCCAAAGAACACAGGACTGACTTgccaggatgtgtgtgtggggggtccagagttgccaggtttttTCCAGCCAAATTtggcttgtttgaaaatccagtcGCGGGTCAAAATTTTGGGGTGgctggttgtgttttttttgggctATTTCTAAAAATGACCgcggatagagggagagagggaggggcaaGAACAGAAATGCTTAAGTTAAAGTCATTTACTGGATACTGGATATtattgttggacctggcaaccttGGTGAggcctcctgcactgaatgtggattGGATTTTTGTCGCTTGAATGTGTTTGCATAGACAATTTTAGTCAGATGCCatcggtcatgatcattacccactgcactgtctactaTGGATGGTAAGGCCTTCTGTGACGTATTCCCAATACACACGTGACACTGCTTTGGAAATGGATTATCCTATCCATCTGGGACCAACAATGAGGCCTTGCTTGAATTCTAATAATTTACACCATCCTGGCCATGAGCATGGTGgtcctcacttacaagataacacctcacaacgtatacagAAGTGAATGTTTCCAAGCTGCTCCCTGAGATTACAATTCACAATCAGTTTACAGACTGCTATTCCAAAAATTATGTAAAGCATCTGTAATTCTAAAAGTACCTACCAAGTGCTCAGCACATGTGTGAGCTGAAAAATCACCACAAGTGGCGCCACATGAAGAATACAAACACTTAGAGAAAGCACCTTTTATTCTACTAACTGTCCTTTAATGAATTGGTCCGTAAAACAAGAGTAAAGAACCttttttaagtgtaaaatgtatttcttcTATACATTTTCTTGTAGAATGTACAGTCCTTTTCACTGGTATCATATATTTGAGTGGAAGGGATGGCAGCGCATGATGAGCTGAAGGAATCCGTTTCTCTACAGCCAGTGCCAGAGGTGAGCAGAGGTGCTTAATGCTCAGGTAACAAGGCCCACAGGCCTGGCATGAGCTTTGGCTGGAGAAGCATTGTGAGTCACCCTCCCTTGGTCACCAGCATGGTTGGCATAAAGAAGGCTGCAGGGCTGCGATGACTCTCTTCCTGCTTTTGATGCAGAAGAAGAAAGTGCTCTGAAACTAGACCGAACACCTGCTCTGACTGGAGGTCACAGGTTGTGGACAAATGTGGAGAAGCCAACACTGACAGGGCTGCAAAACATTGCTTCTGTAACAGTGCTGTACTGTCTGTCACTCTGAAGGAATAGGGCCTATAGCTCCTGCATTcggcagaaaaaaaatccttgtaTGTTCAGAGATCTGCATTCTCGGACTGATACCAGAAA
>XR_002649763.1
CCACAGCTGATCATCATCACAGCACAACATCACTCTCTGCACGAGCACCTGAAGAAAAAGCCTGCTGGAGTCATGTTCACTACTAGCTCACAACAGAGCCCTGTCCTACACCCAAAAAAGCCAATCATTTGACTGGTTACACAGCAAGTAAACAGAGGACCGTGGACCTGCTAGAAGTCCTTGTAGGGGTGTGCGTGTGGTGCATATGTATGGGTGCTGCTGCCCAGGCAGAGGGAGTAGACACCACCGACCACTGAAATGGAGGAGAGAAGTGGACAGCTCGCGGTGAGatggaaaaaaacacatccGTCTTCATCAGGAGGGATGACAGACGACTATGAGGTGTGTTTCATATTTGCGTCTCGTGCGGCTGGCGCTGAAGACGCTGGCTGGATGGCGTGCACCTGCGGTTGGCTTGCGCAGGACAGAGCAGGCAGGGCATGCGCAGCTGCGGACCACCGCCTGTCTGCGTACAGCACCTAATGGAGAGTGACACTAGCTCTCTGTGCTGCCTGCCTGAGAcagacactcactcactcactcacactcttcCTTAGTGTAGCTCAGTGTAGCTCAACCTGATAACAGAAGAGCTGAGTGGAGaacttaaatgtatatttttaaatgtgctacttTATTTGGGCCAATCAGAAAAGGACATTGTTTTTGATtactgggatttgtgtgggaaAGCACAAACAACAAGTAAGAAACTAGTatcttgtcccatgacttttgccacattccCTGGAAGCCAAAGAACACAGGACTGACTTgccaggatgtgtgtgtggggggtccagagttgccaggtttttTCCAGCCAAATTtggcttgtttgaaaatccagtcGCGGGTCAAAATTTTGGGGTGgctggttgtgttttttttgggctATTTCTAAAAATGACCgcggatagagggagagagggaggggcaaGAACAGAAATGCTTAAGTTAAAGTCATTTACTGGATACTGGATATtattgttggacctggcaaccttGGTGAggcctcctgcactgaatgtggattGGATTTTTGTCGCTTGAATGTGTTTGCATAGACAATTTTAGTCAGATGCCatcggtcatgatcattacccactgcactgtctactaTGGATGGTAAGGCCTTCTGTGACGTATTCCCAATACACACGTGACACTGCTTTGGAAATGGATTATCCTATCCATCTGGGACCAACAATGAGGCCTTGCTTGAATTCTAATAATTTACACCATCCTGGCCATGAGCATGGTGgtcctcacttacaagataacacctcacaacgtatacagAAGTGAATGTTTCCAAGCTGCTCCCTGAGATTACAATTCACAATCAGTTTACAGACTGCTATTCCAAAAATTATGTAAAGCATCTGTAATTCTAAAAGTACCTACCAAGTGCTCAGCACATGTGTGAGCTGAAAAATCACCACAAGTGGCGCCACATGAAGAATACAAACACTTAGAGAAAGCACCTTTTATTCTACTAACTGTCCTTTAATGAATTGGTCCGTAAAACAAGAGTAAAGAACCttttttaagtgtaaaatgtatttcttcTATACATTTTCTTGTAGAATGTACAGTCCTTTTCACTGGTATCATATATTTGAGTGGAAGGGATGGCAGCGCATGATGAGCTGAAGGAATCCGTTTCTCTACAGCCAGTGCCAGAGGTGAGCAGAGGTGCTTAATGCTCAGGTAACAAGGCCCACAGGCCTGGCATGAGCTTTGGCTGGAGAAGCATTGTGAGTCACCCTCCCTTGGTCACCAGCATGGTTGGCATAAAGAAGGCTGCAGGGCTGCGATGACTCTCTTCCTGCTTTTGATGCAGAAGAAGAAAGTGCTCTGAAACTAGACCGAACACCTGCTCTGACTGGAGGTCACAGGTTGTGGACAAATGTGGAGAAGCCAACACTGACAGGGCTGCAAAACATTGCTTCTGTAACAGTGCTGTACTGTCTGTCACTCTGAAGGAATAGGGCCTATAGCTCCTGCATTcggcagaaaaaaaatccttgtaTGTTCAGAGATCTGCATTCTCGGACTGATACCAGAAA
>XR_002649767.1
CCACAGCTGATCATCATCACAGCACAACATCACTCTCTGCACGAGCACCTGAAGAAAAAGCCTGCTGGAGTCATGTTCACTACTAGCTCACAACAGAGCCCTGTCCTACACCCAAAAAAGCCAATCATTTGACTGGTTACACAGCAAGTAAACAGAGGACCGTGGACCTGCTAGAAGTCCTTGTAGGGGTGTGCGTGTGGTGCATATGTATGGGTGCTGCTGCCCAGGCAGAGGGAGTAGACACCACCGACCACTGAAtaactaaATGACAGAAAATGCCATCATCTACTTCATCTACAGAACATCTACATTCATCTCTACCAAGACCTCTACTAGCATGCAGACAAGTCCGAGTCACAACAGGTCTGGAAACAGGCATAGGAAAGGAGAAGAAGTTAAAGTAGATGTGAAGAAATGGTAGAAAAATGCAACATTGAAGGGAAAACAGGACCTGAACTCAAGATAAATAATAGAtctgcattaatttatttagaaagCAGGGCTAGCCTGTTGGAGTG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU5393 False 1022 lncRNA 0.43 4 15587306 15629722
XR_001518353.2 False 1589 lncRNA 0.38 3 15587842 15616474
XR_002649761.1 True 3143 lncRNA 0.43 3 15588874 15616474
XR_002649763.1 False 2072 lncRNA 0.46 4 15588874 15629712
XR_002649767.1 False 518 lncRNA 0.45 4 15587842 15629712

Neighbor

gene id symbol gene type direction distance location
evi2b NA coding downstream 456167 15126748 ~ 15131139 (-)
LOC103023234 omg coding downstream 466652 15115625 ~ 15120654 (-)
LOC103045693 LOC108425804,LOC107683437,LOC107588342,LOC107757408,LOC107672102,LOC105010786 coding downstream 703242 14880698 ~ 14884064 (-)
LOC103043873 tmem87a,LOC108425916 coding downstream 750060 14822526 ~ 14837246 (-)
LOC111192841 NA coding downstream 831528 14753910 ~ 14755778 (-)
LOC103024177 abcg4b,abcg4,LOC108439979,LOC107585553,LOC107683844,LOC104937503 coding upstream 41369 15671091 ~ 15694631 (-)
usf1 usf1,LOC107657261,LOC107601709 coding upstream 70282 15700004 ~ 15705950 (-)
LOC103025848 usp2a,LOC108425809,LOC105920897,LOC103474949,LOC102230709,LOC106956784 coding upstream 198259 15827981 ~ 15863038 (-)
LOC103024414 LOC108425808,LOC108277492,LOC107729106,LOC106612673,LOC107657569,LOC107586288,LOC106580774 coding upstream 234094 15863816 ~ 15878451 (-)
ulk2 ulk2,LOC107717276,LOC107657566 coding upstream 265937 15895659 ~ 15931013 (-)
G3984 NA non-coding downstream 358655 15228061 ~ 15228651 (-)
G3968 NA non-coding downstream 400912 15182402 ~ 15186394 (-)
G3947 NA non-coding downstream 517509 15069530 ~ 15069797 (-)
trnae-uuc NA non-coding downstream 552220 15035015 ~ 15035086 (-)
LOC111191520 NA non-coding downstream 552557 15033171 ~ 15034749 (-)
G4037 LOC108411104,LOC108411099,LOC108411102,LOC108277479,LOC108411100,LOC108411103,LOC108411101,LOC108277480 non-coding upstream 93715 15723437 ~ 15821127 (-)
G4041 NA non-coding upstream 98300 15728022 ~ 15729955 (-)
G4030 NA non-coding upstream 151793 15781515 ~ 15792259 (-)
G4079 NA non-coding upstream 249491 15879213 ~ 15879463 (-)
G4085 LOC107729125,LOC107586255,LOC108277491,LOC108425811,LOC107662794 non-coding upstream 307023 15936745 ~ 15938821 (-)
slc6a4 slc6a4,slc6a4a,LOC107743629,LOC107669739,LOC107548586,LOC107756784,LOC107589714,LOC107685089 other downstream 1115554 14380755 ~ 14471752 (-)
G3612 NA other downstream 1303081 14283623 ~ 14284225 (-)
LOC111189390 NA other downstream 1454069 14124173 ~ 14133237 (-)
slc43a2 slc43a2,LOC107685082,LOC107548581,LOC107589710 other downstream 2014934 13544500 ~ 13572372 (-)
LOC111197384 NA other downstream 2451665 13130212 ~ 13135641 (-)
LOC103022652 LOC103022652,LOC108425821,LOC108277503 other upstream 648283 16278005 ~ 16282632 (-)
ercc2 ercc2,LOC107743694,LOC107601732 other upstream 1014770 16644492 ~ 16653968 (-)
LOC103040336 mpzl2 other upstream 2354163 17983885 ~ 17998749 (-)
G4621 NA other upstream 2400640 18030362 ~ 18040766 (-)
LOC103031959 NA other upstream 2566858 18196580 ~ 18226004 (-)

Expression


Co-expression Network