G3947


Basic Information

Item Value
gene id G3947
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035897.1
NCBI id CM008300.1
chromosome length 26953843
location 15069530 ~ 15069797 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU5327
agaaaaacgcgctgcaaaaagaaaaacgcactgcaaatagaaccacaacacaacggaattttcccgggggaccttaaaagatgctgtaccagctgtatacaaaggacaataagtggcaaacaagcttctgaaaagtaagttatgtttattacctgtgataaccacggttgtgtgcatattattaaaagttctgcttcacaaaacgccttgtttgccacttattgtcctttgtacacatagtgaagtc

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU5327 True 247 lncRNA 0.46 2 15069530 15069797

Neighbor

gene id symbol gene type direction distance location
LOC103045693 LOC108425804,LOC107683437,LOC107588342,LOC107757408,LOC107672102,LOC105010786 coding downstream 185466 14880698 ~ 14884064 (-)
LOC103043873 tmem87a,LOC108425916 coding downstream 232284 14822526 ~ 14837246 (-)
LOC111192841 NA coding downstream 313752 14753910 ~ 14755778 (-)
LOC103041915 NA coding downstream 349136 14712318 ~ 14720394 (-)
LOC103040481 eml2,LOC108277999,LOC107685092,LOC107669753 coding downstream 438817 14593025 ~ 14630713 (-)
LOC103023234 omg coding upstream 45828 15115625 ~ 15120654 (-)
evi2b NA coding upstream 56951 15126748 ~ 15131139 (-)
LOC103024177 abcg4b,abcg4,LOC108439979,LOC107585553,LOC107683844,LOC104937503 coding upstream 601294 15671091 ~ 15694631 (-)
usf1 usf1,LOC107657261,LOC107601709 coding upstream 630207 15700004 ~ 15705950 (-)
LOC103025848 usp2a,LOC108425809,LOC105920897,LOC103474949,LOC102230709,LOC106956784 coding upstream 758184 15827981 ~ 15863038 (-)
trnae-uuc NA non-coding downstream 34444 15035015 ~ 15035086 (-)
LOC111191520 NA non-coding downstream 34781 15033171 ~ 15034749 (-)
G3785 NA non-coding downstream 51330 15016304 ~ 15018200 (-)
G3756 vezf1b,LOC108425912,LOC108278304,LOC108435808 non-coding downstream 87017 14900548 ~ 14982513 (-)
G3968 NA non-coding upstream 112605 15182402 ~ 15186394 (-)
G3984 NA non-coding upstream 158264 15228061 ~ 15228651 (-)
LOC107197064 NA non-coding upstream 517509 15587306 ~ 15629722 (-)
G4037 LOC108411104,LOC108411099,LOC108411102,LOC108277479,LOC108411100,LOC108411103,LOC108411101,LOC108277480 non-coding upstream 653640 15723437 ~ 15821127 (-)
G4041 NA non-coding upstream 658225 15728022 ~ 15729955 (-)
slc6a4 slc6a4,slc6a4a,LOC107743629,LOC107669739,LOC107548586,LOC107756784,LOC107589714,LOC107685089 other downstream 597778 14380755 ~ 14471752 (-)
G3612 NA other downstream 785305 14283623 ~ 14284225 (-)
LOC111189390 NA other downstream 936293 14124173 ~ 14133237 (-)
slc43a2 slc43a2,LOC107685082,LOC107548581,LOC107589710 other downstream 1497158 13544500 ~ 13572372 (-)
LOC111197384 NA other downstream 1933889 13130212 ~ 13135641 (-)
LOC103022652 LOC103022652,LOC108425821,LOC108277503 other upstream 1208208 16278005 ~ 16282632 (-)
ercc2 ercc2,LOC107743694,LOC107601732 other upstream 1574695 16644492 ~ 16653968 (-)
LOC103040336 mpzl2 other upstream 2914088 17983885 ~ 17998749 (-)
G4621 NA other upstream 2960565 18030362 ~ 18040766 (-)
LOC103031959 NA other upstream 3126783 18196580 ~ 18226004 (-)

Expression


Co-expression Network