LOC103033175


Basic Information

Item Value
gene id LOC103033175
gene name NA
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035897.1
NCBI id CM008300.1
chromosome length 26953843
location 20732285 ~ 20740993 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022669488.1
CGGTAAGGGTGGAAGGAGGTATTGTTACTTTCAAGCTTGATAGAGCAtcatttgaatatattttagtCATCAGGGGGGATTCCTACAGTTTTTCCAAGGTTTGGGTGCAGAATTGACAGTGTGTTACAGGATTGTCCATCGTGGTTGAAGATTGCTCATGATTTTTACCATTTTGTAGGAATATTTCAGCAACATCTCAAGATATTAACTTTATCCACCATGAGCTCAATCACCAAATCGTCTTCCTCACGCACCTCCTCATCCTCATTCCGCTCTTCATCGCGGTACAGCTGCAGTAGCGTTAGTTCGACTTGGACTGAAGGATCTACCGGGACGGACCGTTCATTCCCGGCTTTCCTTGATCGTAGACCTCAGGTTCTGTTTGGGGAAGACCCTCTGTCATTACCGGCCTTTAGCAACCATCCAAGAGGACCCTACCTGCCAAACCAGGCTGATCCAGAAGGTACCTTCTCTACCTGCAGTGGTGACCTGAGCCCTTTTGGGAGTTACAACGGTGATCGGGAGTCGTTTGGAAGTTACGGAAGCGAGAGGGAATCGTTCGGAGGTTACCAGGGAGACAGGAAGTCCTGCTCTGGGGGTTACCAAGGTGACTGGAGCCATAGAGATGATGCACAGGCTACTTCTGGCCAGTCTGCCCGTGTGGGTGCGGTTCAGATGGTGGGCAACAGTTACTACTTCTCTGCTGACGTCAGCCAGTTTGAGCCCCATGATGTGGTGGTGATGGCCTACAACCACAGTGTCGTTATACATGCTGAGAAGGTTGGAGATGATGGAAGCATCAGGGACAAGTTCATCCACAAGTCACTGTTGCCAGAAGACATGGACCCTTTGTCCGTAAACGGGACCCTGACACCGGAGGGGACGCTCGTGATCAGCGTGAAGCGCAACACCAAGCCACTCTCGAACTCTCTGACCTCTAATTTCCACTCTGAAGGTCATCAGTGTTACTGATACTAGAGAAACAAAAACTGGAATCAACTACTTGCACTGATTTCCAGTCATGTTGTAATTAACGCTCATTCCCAAAtatatcaataatcaataattcagttaaacACCCTAAAGTTAGCTTCTAAAAAATTGCCTCCAAAAGTGCTAATATGCAAATATCatgctatttttaggttttgCATCAATTCTATTATGTGTAGCATTAGCATATCAGTGTAAATGTACTAGTTTGCATACTTACTTAGCACCTGCCGAGCTCTGCTGCAAGTGCTAAGTGCTTAGCTTTTAGCAGTTAGCCTACTCAGTGATGCAGTGACAAATCTCAGACCAGAGATTTTTTAAAGCTTCAGGCTAATGCCAAAGTCAACAAATTACAAAagactatagtcttaccttttggtgtgattttggacattttttcaTCTCTAATATTCCATGAGATTATAACTCAATTTATTTGGAAAATGCATGGGAGTTGTGTATTGCGCCAACTTTCATTTAGATATGCAACTAAAAAACACTCACAGGAATTTTCCAAGTCATCTGAGTTGTAATCTCATGGAATATAAGAGTtgtaaaaatgtccaaaaaaacaaaattttctCTCAAAGTAAGCAAATTACGTCTTATGTTTTGGTGtgattttggacattttttccAACTCTTATAATCTTTCAAATTTAACTTAAATGACTGTGAAGATGCCTGGGAGtgatagtgtatagtgtatagagtATAGTGTATAGATTCATTcagattttacttttaatttccctccaaaatctgcaaaaaaaacaaacaaacataccaaaaaaaaaggttccccAAATTGGCAAACTACATAAGGCTATAGTTTTACCTTTTGGTGtgattttggacattttttctAACTCCCATAATCTTTTAGATTAAAACTCAAATGACTGCGGGAATGCCTGGGacttttgtgtattgtgtattttttttttcagatatgcaataaaaactattttaatttttcccctaaaa
>XM_022669491.1
GCGGTAAGGGTGGAAGGAGGTATTGTTACTTTCAAGCTTGATAGAGCAtcatttgaatatattttagtCATCAGGGGGGATTCCTACAGTTTTTCCAAGGAATATTTCAGCAACATCTCAAGATATTAACTTTATCCACCATGAGCTCAATCACCAAATCGTCTTCCTCACGCACCTCCTCATCCTCATTCCGCTCTTCATCGCGGTACAGCTGCAGTAGCGTTAGTTCGACTTGGACTGAAGGATCTACCGGGACGGACCGTTCATTCCCGGCTTTCCTTGATCGTAGACCTCAGGTTCTGTTTGGGGAAGACCCTCTGTCATTACCGGCCTTTAGCAACCATCCAAGAGGACCCTACCTGCCAAACCAGGCTGATCCAGAAGGTACCTTCTCTACCTGCAGTGGTGACCTGAGCCCTTTTGGGAGTTACAACGGTGATCGGGAGTCGTTTGGAAGTTACGGAAGCGAGAGGGAATCGTTCGGAGGTTACCAGGGAGACAGGAAGTCCTGCTCTGGGGGTTACCAAGGTGACTGGAGCCATAGAGATGATGCACAGGCTACTTCTGGCCAGTCTGCCCGTGTGGGTGCGGTTCAGATGGTGGGCAACAGTTACTACTTCTCTGCTGACGTCAGCCAGTTTGAGCCCCATGATGTGGTGGTGATGGCCTACAACCACAGTGTCGTTATACATGCTGAGAAGGTTGGAGATGATGGAAGCATCAGGGACAAGTTCATCCACAAGTCACTGTTGCCAGAAGACATGGACCCTTTGTCCGTAAACGGGACCCTGACACCGGAGGGGACGCTCGTGATCAGCGTGAAGCGCAACACCAAGCCACTCTCGAACTCTCTGACCTCTAATTTCCACTCTGAAGGTCATCAGTGTTACTGATACTAGAGAAACAAAAACTGGAATCAACTACTTGCACTGATTTCCAGTCATGTTGTAATTAACGCTCATTCCCAAAtatatcaataatcaataattcagttaaacACCCTAAAGTTAGCTTCTAAAAAATTGCCTCCAAAAGTGCTAATATGCAAATATCatgctatttttaggttttgCATCAATTCTATTATGTGTAGCATTAGCATATCAGTGTAAATGTACTAGTTTGCATACTTACTTAGCACCTGCCGAGCTCTGCTGCAAGTGCTAAGTGCTTAGCTTTTAGCAGTTAGCCTACTCAGTGATGCAGTGACAAATCTCAGACCAGAGATTTTTTAAAGCTTCAGGCTAATGCCAAAGTCAACAAATTACAAAagactatagtcttaccttttggtgtgattttggacattttttcaTCTCTAATATTCCATGAGATTATAACTCAATTTATTTGGAAAATGCATGGGAGTTGTGTATTGCGCCAACTTTCATTTAGATATGCAACTAAAAAACACTCACAGGAATTTTCCAAGTCATCTGAGTTGTAATCTCATGGAATATAAGAGTtgtaaaaatgtccaaaaaaacaaaattttctCTCAAAGTAAGCAAATTACGTCTTATGTTTTGGTGtgattttggacattttttccAACTCTTATAATCTTTCAAATTTAACTTAAATGACTGTGAAGATGCCTGGGAGtgatagtgtatagtgtatagagtATAGTGTATAGATTCATTcagattttacttttaatttccctccaaaatctgcaaaaaaaacaaacaaacataccaaaaaaaaaggttccccAAATTGGCAAACTACATAAGGCTATAGTTTTACCTTTTGGTGtgattttggacattttttctAACTCCCATAATCTTTTAGATTAAAACTCAAATGACTGCGGGAATGCCTGGGacttttgtgtattgtgtattttttttttcagatatgcaataaaaactattttaatttttcccctaaaa

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022669488.1 True 1980 mRNA 0.41 4 20732286 20740993
XM_022669491.1 False 1901 mRNA 0.41 4 20732285 20740993

Neighbor

gene id symbol gene type direction distance location
fam131a fam131a,LOC102799247 coding upstream 7711 20700702 ~ 20724574 (+)
LOC111192490 LOC108277610 coding upstream 42928 20671727 ~ 20689357 (+)
eif4g1 LOC108280304,LOC103370583 coding upstream 94337 20585146 ~ 20637948 (+)
LOC111192969 NA coding upstream 156858 20571402 ~ 20575427 (+)
LOC111192413 NA coding upstream 174627 20555459 ~ 20557658 (+)
LOC103030875 LOC108413394,LOC108278199 coding downstream 267128 21008121 ~ 21086736 (+)
LOC103042479 ecel1 coding downstream 448748 21189741 ~ 21245822 (+)
LOC103042160 LOC108412514 coding downstream 507860 21248853 ~ 21261198 (+)
clpb clpb,LOC107568463,LOC108261447,LOC108276567 coding downstream 1083934 21824927 ~ 21890977 (+)
phox2a phox2a,LOC107738288,LOC107679437 coding downstream 1167280 21908273 ~ 21913768 (+)
G4994 NA non-coding upstream 27785 20703760 ~ 20704500 (+)
G4951 NA non-coding upstream 246120 20485825 ~ 20486165 (+)
G4949 NA non-coding upstream 277792 20452126 ~ 20454493 (+)
G4940 NA non-coding upstream 347030 20384764 ~ 20385255 (+)
LOC111192871 NA non-coding upstream 351990 20379244 ~ 20380295 (+)
G5003 NA non-coding downstream 16182 20757175 ~ 20762971 (+)
G5012 NA non-coding downstream 141818 20882811 ~ 20883093 (+)
G5028 NA non-coding downstream 241250 20982243 ~ 20982748 (+)
G5036 NA non-coding downstream 346981 21087974 ~ 21160121 (+)
LOC103030556 NA non-coding downstream 520742 21261735 ~ 21269163 (+)
LOC103037169 NA other upstream 149411 20558523 ~ 20582874 (+)
LOC107197594 NA other upstream 180650 20549191 ~ 20551635 (+)
G4775 LOC108411134 other upstream 1566654 19160731 ~ 19165631 (+)
G4612 NA other upstream 1972427 18759375 ~ 18759858 (+)
G4550 sik3 other upstream 2658622 18071964 ~ 18073663 (+)
G5026 NA other downstream 242714 20983707 ~ 20999200 (+)
LOC103022859 fgf12,fgf12b,fgf12a,LOC108411839,LOC108278337,LOC107689585,LOC108436038 other downstream 1315529 22056522 ~ 22154926 (+)
LOC103043812 gria4a,gria4,LOC107725765,LOC107670112,LOC107689577,LOC107566895,LOC107560842,LOC107756206,LOC107756230 other downstream 1666563 22407556 ~ 22524746 (+)
LOC103041654 chordc1,LOC108412466 other downstream 1901617 22642610 ~ 22673984 (+)
LOC103045948 grm5b,LOC108411478,LOC107670133,LOC107737424,LOC107731813,LOC107669866 other downstream 1967919 22708912 ~ 22758213 (+)

Expression


Co-expression Network