G97717


Basic Information

Item Value
gene id G97717
gene name NA
gene type misc
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035907.1
NCBI id CM008310.1
chromosome length 11650534
location 5578562 ~ 5586666 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU131661
TGAAGTCTGCAGTGCCCACTCAGCGCAACGCATCTGTCTCCTcagagattaatattaaattaaatactaaagCTGTTAGTTTTAGGATGTTGGTGTTTGAGCTGAGAGCCGCAGACAGGATTCTGCGCTtcCTCTTCCTTtatttcctcctcctcctccttttctcgCTGGAGCCACTGGTAGCTGAGCTCAATAACTCCTGTATTGTGGAGTGGCTTCCAAACGGCACCATATACACCTTGAAGAGCATGTGGTTTCGAGTGAAGGCTTCAGTTGGCTTGTTGACGGCATTGTCAAGGCAAACGAAGACGATCTGGACCCCACAATGGTTCACAGTCGAGGACCGCGCTTCATCGTGCTTTATTCCTGTCTGACACTTTTGTCGTACAGGAGCACGTTTAGTGTGaTTCCCTGGAACTGTTTCACATCCTGTcccatcacacctgcacctaAAGATGCTGGGAATCTCAGTGCTGTAATCGCTGGCTGTAGCGCTGCTGGTGTAGTGGTACTCTGTGCTCTTGTGCTGCTCGGGGTGCTCTGGTGGAAGAAGGATAGACTGAAAAGaTATTTCCATCCGGAGACTGCTGCCGTTCCTACATGTGCCTACAGCGCAGCAGAGTCTGGAGTTTCTTCACCAAGTTAAGGACATGTCCTTCAAATGTCTTCAAATGTAATGAACCTCTCTAGAGTTGTGTGGTATTCTCGACCAGCATCACTCCGCACCGTATTACAAGGGATGTGGCATAGCACAAGTTGATTCCATGCATCTCATTGTGCATTACTattcaaacttaaaaaatatcctTCTATTccagttgtggtctctagtatggaTGAATgcaatgtgagctgttttttgtgaaaaaagtgatcTCTGAAAAAAGACAGGATTTAGGCtcctgctcatgaatattcacacATGCAAAAATATTGCCTCAGATTGGCgtacagcactgcagcagagaatgcctACCTACCTGTCTTTACCCCACAGTACATTTTACAGCTCTTAAACTCAAAGgactaaatgttttcagagatacagccttagttataaaggtATATACAGCACTGAGTGCCTAAAGATAACGCCACACCCCCCACACCCCGCTACGTGCAACACTGCTCTCCCCGTGGCATTGATAAACTTTCGTTCAGCTAATTTGTTTAGCTAAATCGGCGCCTGCTTtgactggtgttctgtcgagttgagcTACCTTGACAAACCGTGCTCccatagtgtttatttaaggtctcggtaaaacaaagaatcaaccggagatccaatttgaacctatagttacttacgatagttaactaatgttaattatctggtggattgctattttaacagtgcagctacctgctTCTCAGCGGATGAAACTGACCAGCCCTGAAACTGTCTAATttgttactcccatcactgatactaattgacgggttgatgtagacacggtgcttttcctgatagactgttttttctgaatattttattttactagctgctgcagacagtgAGGAAgagcagcatcataaacaactcagagatctgctgtatttcacaaacaacaagaacaagtggattttagtggaaggagaaCTTTATACTTTGTTATATCATGCTGTAGAACAGGGTTGGGTATCGTTTGGGTGTCAagattgtatttattgtgtatttatacGAAGAGTACTTTATTTTCtatgttatttatgtattaatgtGTTTGTCTCATCTTAAATAGTGCACAGATTAAGATGTTAAAGGCCGataacatattttattcatccTACTTTTCAGTCCTGAGCATTACAAAATCCACACATAGAAAAGTACTCTAATTTGCCCTAAAAAACTGTGAACTCTGAACTGTGACCTGGCTTAGACTGTTCCATACCTTTTACATTTGATTTGTAGGGGGTTAAAACTATAACTAAAGCACACAACAAAAATGATTGTTCTTTTTTGAacacaaaccaatcaattgagATTTTCTCTGGCAGCTTTTACATAAAGATTTACAAACCAATTTGTTAAATCAAATGAATTCTCCAAGcagtaagtaaaataaatgtactgtacGATGTGCTGCGTAGTAATTTAACATGCTTATGTCCTAGTTGTTACCCTTTTATATATGACtgtatacagtcattggtccagTGATCATCTGATTCACAGGTACTGGACACAGTTTTTATCACTTGTGGTGTGAACACAGGTTTCCACTACTTACATTTCTGACATTTCTGACCGCTGGTGGCCTCGAGGCAGGGGCCAGGGGGGGCAACTGCCACCCTTGATGCCTTCATGGTTCAAAAGCATTCTAAAGTGCACTCTAt
>TU131662
TGAAGTCTGCAGTGCCCACTCAGCGCAACGCATCTGTCTCCTcagagattaatattaaattaaatactaaagCTGTTAGTTTTAGGATGTTGGTGTTTGAGCTGAGAGCCGCAGACAGGATTCTGCGCTtcCTCTTCCTTtatttcctcctcctcctccttttctcgCTGGAGCCACTGGTAGCTGAGCTCAATAACTCCTGTATTGTGGAGTGGCTTCCAAACGGCACCATATACACCTTGAAGAGCATGTGGTTTCGAGTGAAGGCTTCAGTTGGCTTGTTGACGGCATTGTCAAGGCAAACGAAGACGATCTGGACCCCACAATGGTTCACAGTCGAGGACCGCGCTTCATCGTGCTTTATTCCTGTCTGACACTTTTGTCGTACAGGAGCACGTTTAGTGTGaTTCCCTGGAACTGTTTCACATCCTGTcccatcacacctgcacctaAAGcTGCCACTTCTACGTTCGATGGAAGGAACTCTACAGATGCTGGGAATCTCAGTGCTGTAATCGCTGGCTGTAGCGCTGCTGGTGTAGTGGTACTCTGTGCTCTTGTGCTGCTCGGGGTGCTCTGGTGGAAGAAGGATAGACTGAAAAGaTATTTCCATCCGGAGACTGCTGCCGTTCCTACATGTGCCTACAGCGCAGCAGAGTCTGGAGTTTCTTCACCAAGTTAAGGACATGTCCTTCAAATGTCTTCAAATGTAATGAACCTCTCTAGAGTTGTGTGGTATTCTCGACCAGCATCACTCCGCACCGTATTACAAGGGATGTGGCATAGCACAAGTTGATTCCATGCATCTCATTGTGCATTACTattcaaacttaaaaaatatcctTCTATTccagttgtggtctctagtatggaTGAATgcaatgtgagctgttttttgtgaaaaaagtgatcTCTGAAAAAAGACAGGATTTAGGCtcctgctcatgaatattcacacATGCAAAAATATTGCCTCAGATTGGCgtacagcactgcagcagagaatgcctACCTACCTGTCTTTACCCCACAGTACATTTTACAGCTCTTAAACTCAAAGgactaaatgttttcagagatacagccttagttataaaggtATATACAGCACTGAGTGCCTAAAGATAACGCCACACCCCCCACACCCCGCTACGTGCAACACTGCTCTCCCCGTGGCATTGATAAACTTTCGTTCAGCTAATTTGTTTAGCTAAATCGGCGCCTGCTTtgactggtgttctgtcgagttgagcTACCTTGACAAACCGTGCTCccatagtgtttatttaaggtctcggtaaaacaaagaatcaaccggagatccaatttgaacctatagttacttacgatagttaactaatgttaattatctggtggattgctattttaacagtgcagctacctgctTCTCAGCGGATGAAACTGACCAGCCCTGAAACTGTCTAATttgttactcccatcactgatactaattgacgggttgatgtagacacggtgcttttcctgatagactgttttttctgaatattttattttactagctgctgcagacagtgAGGAAgagcagcatcataaacaactcagagatctgctgtatttcacaaacaacaagaacaagtggattttagtggaaggagaaCTTTATACTTTGTTATATCATGCTGTAGAACAGGGTTGGGTATCGTTTGGGTGTCAagattgtatttattgtgtatttatacGAAGAGTACTTTATTTTCtatgttatttatgtattaatgtGTTTGTCTCATCTTAAATAGTGCACAGATTAAGATGTTAAAGGCCGataacatattttattcatccTACTTTTCAGTCCTGAGCATTACAAAATCCACACATAGAAAAGTACTCTAATTTGCCCTAAAAAACTGTGAACTCTGAACTGTGACCTGGCTTAGACTGTTCCATACCTTTTACATTTGATTTGTAGGGGGTTAAAACTATAACTAAAGCACACAACAAAAATGATTGTTCTTTTTTGAacacaaaccaatcaattgagATTTTCTCTGGCAGCTTTTACATAAAGATTTACAAACCAATTTGTTAAATCAAATGAATTCTCCAAGcagtaagtaaaataaatgtactgtacGATGTGCTGCGTAGTAATTTAACATGCTTATGTCCTAGTTGTTACCCTTTTATATATGACtgtatacagtcattggtccagTGATCATCTGATTCACAGGTACTGGACACAGTTTTTATCACTTGTGGTGTGAACACAGGTTTCCACTACTTACATTTCTGACATTTCTGACCGCTGGTGGCCTCGAGGCAGGGGCCAGGGGGGGCAACTGCCACCCTTGATGCCTTCATGGTTCAAAAGCATTCTAAAGTGCACTCTAt

Function

GO:

id name namespace
GO:0035845 photoreceptor cell outer segment organization biological_process

KEGG:

id description
ko04664 Fc epsilon RI signaling pathway

RNA

RNA id representative length rna type GC content exon number start site end site
TU131661 False 2343 lncRNA 0.42 7 5578562 5586666
TU131662 True 2379 TUCP 0.42 7 5578562 5586666

Neighbor

gene id symbol gene type direction distance location
setdb1 setdb1,LOC107723461,LOC107582057,LOC107671207 coding downstream 53952 5503088 ~ 5524610 (-)
LOC111193391 NA coding downstream 87102 5478719 ~ 5491460 (-)
LOC103027644 NA coding downstream 101426 5471449 ~ 5477136 (-)
LOC111193428 NA coding downstream 116507 5458465 ~ 5462055 (-)
LOC111193427 NA coding downstream 128503 5443589 ~ 5450059 (-)
il6r NA coding upstream 148586 5735252 ~ 5751437 (-)
atp8b2 atp8b2,LOC107677029,LOC107714674,LOC107667702 coding upstream 170983 5757649 ~ 5808960 (-)
aqp10 LOC108429989 coding upstream 223289 5809955 ~ 5818034 (-)
LOC103043753 NA coding upstream 231370 5818036 ~ 5835721 (-)
tuft1 tuft1 coding upstream 257193 5843859 ~ 5869292 (-)
LOC111193399 NA non-coding downstream 77199 5497103 ~ 5501363 (-)
LOC111193398 NA non-coding downstream 91249 5486294 ~ 5487313 (-)
G97694 NA non-coding downstream 143773 5434579 ~ 5434789 (-)
G97690 NA non-coding downstream 156068 5421794 ~ 5422494 (-)
LOC111193426 NA non-coding downstream 223973 5353653 ~ 5354589 (-)
G97734 NA non-coding upstream 86673 5673339 ~ 5673728 (-)
G97740 NA non-coding upstream 88979 5675645 ~ 5675981 (-)
LOC111193429 NA non-coding upstream 96147 5682813 ~ 5684212 (-)
G97745 NA non-coding upstream 103468 5690134 ~ 5690538 (-)
LOC111193430 NA non-coding upstream 133405 5720071 ~ 5722251 (-)
LOC103028279 NA other downstream 4658 5540913 ~ 5573904 (-)
dek dek other downstream 1125560 4444229 ~ 4453002 (-)
LOC107197182 NA other downstream 1400136 4150003 ~ 4178426 (-)
mboat1 mboat1 other downstream 1679314 3878696 ~ 3899248 (-)
LOC103031019 NA other downstream 3763528 1811701 ~ 1815034 (-)
riiad1 NA other upstream 4316 5590982 ~ 5593496 (-)
LOC111193431 si:ch211-105c13.3,LOC108441945,LOC107594941,LOC107673711,LOC107582067,LOC107677027,LOC107735771 other upstream 372655 5959321 ~ 6012784 (-)
G97793 LOC103046199 other upstream 429177 6015843 ~ 6022883 (-)
LOC103044954 LOC103044954,LOC108429942,LOC100705775,LOC107699547,LOC107589412,LOC107582081,LOC103388254,LOC107599504,LOC103356523,LOC101077558 other upstream 1256820 6843486 ~ 6850838 (-)
LOC111193437 NA other upstream 2098100 7684766 ~ 7709505 (-)

Expression


Co-expression Network