tuft1 (tuft1)


Basic Information

Item Value
gene id tuft1
gene name tuft1
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035907.1
NCBI id CM008310.1
chromosome length 11650534
location 5843859 ~ 5869292 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007255910.3
tctcatacacaggCTATGACTAGCTCCAAAGTTCAGTTTCAGCAGTCCTCCTCTCTCCAGACAGTGAGACGAGCGGACCTGAAGACTGGTTCATTTGCTCTGGAAAGCTGCCGCAGACTCAGACTGACCCTGCATGAGcagaaccagcagcagcagcagcagcccacCACAGTAAAGCCAATTGGAAGAGCCTTCGCCTTGGTGCAGCCAGCCAATGAGAGGCAGCCTTTGAGGATAGAGCCCATCAAACCGACAGAAGAGAAGGTTGAGGTCATAAAGgTGTATCTGGAAGCCCGGAAGCAGGAGCAGGCCAGACACCAGCAGAGCCTTAGGATGCTCTCAGAAGAAGTCTCTCAGATTCAAGAGGTCAGATATTGTTTGAAGAGCTTGAGGGAGCAGATGGCAGCTAAAAACAACCACAGAACAGAACACAAGttGCAGTTGGTGCGCAACGGTGTCAGCAGAGTGAACGGCGCCCCATCATCAACAGCGCACGACAGCGAGGACAAACAGgAGCCAGTGGACGAGCAAGAGCGAGCGAAGATGAGGGAGGTTAGTAAACGGCTGTACGCTCAGCTGCAGGACGCAGAAAAAAGACACcaggaggagaaagaaaaactaCAGgcGGAGGCCGGTCAGTATAAGCGGCAGCTCTCTGAACAGAGCGAGCGGCTGAAAGATGCCCAGCTGAACGCAGAGCGACAGGACGAGAGAATCGAGGAGCTTCAGAGGCTGATGGGAGGGATGGAGCAGGAGAGCTCCACGCTGAAGGAGGAGCTAATGACCCGGCAGGCGGAGCTGCTGCAGCTGCGGGAGATGAAGGAGGAGGGACAGGCTGAGAAGGAGAGGTTAGAGCAGTTGGAGAGGGAGAATGCCATCCTGAAAGAGAAAATTCATCACCTTGATGATATGCTGAAAAGCCAGCAGAGGAAACTCAGGCAGATGATCgagcagCTCCAGAACTCCCGTATGATGATTCAGGAGCGAGACCGGATCATTAAAGAACTGGAGGAGAAAGTGGCTTTCCTGGAAGCAGAGAACAGGGAGATGCGTGATCAGATGGACTACTATGCAGGTGGTCATCGGTCAAACTCGTACTTGTCAGATCACAACGCTCAGATTGTCTACAGCAAACCTCTGAAACCATCCGGTCCGAGCAGCAAGAGCCTACCGTTCATTAAAGTGATCGAGATCAAATCGTGAAGAGCACCACTGCACCATGAGAACCACGGGTCCACACCTTTCTACAGAATCAACCACAACAGCCCACGCTGCCCTCCATCACTGCACAGCTATTCCACAACAAACCGGAGCAGCTTGAATTTCTGCTTCATTGTCAAACTAACTgactgtgtgtcagtgtgtgtgtgaagctttgttttattgttattagtgtatacataaacatatacacacagatatTTAAAAGATATATATGTAGGTTTTCGGTTACAGTTCGGTGTGAATAGATAGATTGATTAGCATGGTAggtgtaattttttaaatttttattattattatttactgtagcaCACGACCTGACATGACGTTGCCTGCATGCTAACACTGACCCAGACTCAGCTGAAGTATGAGTTCAGGCGAGTTCATAATTTAATCCTAATGAAGAAGTTGAGCAACTAAACCGAAATGAAGAAATATGGGAGAGGAAAGCGTGAGGAAGGAGTGAAttaatccgttttttttttttttcttttttttgaggcTGGCCCTCCAAAACACAAAGTCCAATCTctctgtgaatgtgtgtgtgtgtgtgtatatatatataaatagtctGACAGATTGTGGCGTATAATCCCCTCGTTCACTCACTCAGCTTTCCCTCAATTAAATGACCTTAATTAATCAAACAATCAATTCTTTCTAATCTTTCAGATCTGGAGATTACAGTTAAGCAGCAGATCTGTATATGGGCTTTATGGGCTTGTGCAGTCGTCTCTTGTCTTTATGAAGGAAAGCGAGCCTATCCGTGTGGCGCCAAGTGGAATATGGCCCAGCTTCTAAGCTAAAACTGCTGGGGCCAGGCGCTTAAAATAACCAGCTAAGCCGACTTTCAAGTCAAAGTCTTTAGGCCAttcagaagacaaaaaaaaaaactgaggcaGGCCTGAACATGAAACAGGAAAGGTAAGGCCCGGCCCGGCCTTGCTGCTGTTGTTTAATAACGGCACCATGGTGACCTGCAGCCATTGAAACTGCTGTGTTTGCGCTGCTTAGATGAGTTTCGTGCTCAGGCCTTGAGCAGAATGGGTTTTGTGAGAGCAGACTAAGCCTGACTAAGATCTGTCAGCTTTTAATCTTCTACTAACATCTCAACATTAATGGTTTTTGTTTCAATAAGGCTTTGTCTCAGCTGGCTTAAAGACAAACTGGCACAATGAAGAGTCATAATGATGTCTGAATCATATTACCTAGACTTTGATACCGATATACGATGATACTGAACACACTATGATACTAATTTTTTAGTAATATCCAAAAAAAAGGAGCGAAACTTAAACAGTAACGTAGAAATAGTACAGCAATTTAGTGCTCAGTATGTTTTCTAACAAACTACATCCAGCCAGGTACTGAAATTTGATTGTGAATTATTAATTTTGTACTAATTTGTTCATTACCACACTGAATTTAATACCTATCAATACCAATATCAAAatctattgtattatattatattaagtatTTTCCTCTGCATTTGGTTCATAATATTACTGTGTTCTGGAACAAAAACTAAATGTATAGTTAGACAGTGGGTTGCTGCACTGAAAtggcactttttaaacatcacactacatttattacactaatttagctcagctaatgttaaggttaattttaaatcattaaaaaaaatcaaatgtttgACATAAGGATGGGTTAAAAGAGATATGTATGAGACTGTTTTTAGCTTCTACCTAAAGCTAGCATTAGCCACAAATCATAAGTCATTAAGTTggtttagttaattaattaccTGTACTAGCACTAACATTAGCAATGTAGGCTCgtataataaaacactgttgaAAAACATTCACAAACTACAACAAAACACAGTCAAAATGCGATGTTAGAGCTTCTAAATGGTAAAGAAATACTATCAGGTAGTATATATTAGGTAGTAAAAAGCCCTTTGCCCACCAGACAccctcccttcctccctccctccctctctgctCTGTCTGCACAAACAGTTTATTGGATTATATATTAGTAAATATGCCCCAATAGAAAGCACAGAGTCATGCCTTCATTAAACAGCACTACCCCTAACCAAACAAGAGGAACGAATAGCGGTAAATGAGTATCAAACTCTAATGAAACACGGTTCAGAGATCAGTCTGTTAAAAAAAGGCATTTCAGCTTTCAAACGTTTCGCCCAAACtcccatcatcatcaccaagcttttgtatatactgtatttatggcGTACGAAAtctttctattttctttctACACTTCTGCAAACGTCCGTCCTTAAAACGGGCTTCCTTACTTACTTATTGCaattttctctgttctctatTTAATATAAAGATTATTTTTGTAGTGAAACCTCGGCGCAGTCTTAGAATTATTGATGTATTAATTGCtatgcatatttatatgtaAGATGTGTGTGATTTGAGATTAAAGTTAAGTGAAGTAAA
>XM_007255912.3
TCAGTCAAACGAGATTAGAGCAGCTAAAGAGCGCTAATCCGAGCAGCGCGGGGGAAAAACGCGGTTTTAacagtttattcatttatttatctatttattttaacacaagaGCGACTTTATAGAACTTTCCTGACTGAAAACATGAACGGGACGCGGAGTTTGTGCACATTTGACGACATCAGGTCGGAGGACGGAGCGGAAAGCTGCCGCAGACTCAGACTGACCCTGCATGAGcagaaccagcagcagcagcagcagcccacCACAGTAAAGCCAATTGGAAGAGCCTTCGCCTTGGTGCAGCCAGCCAATGAGAGGCAGCCTTTGAGGATAGAGCCCATCAAACCGACAGAAGAGAAGGTTGAGGTCATAAAGgTGTATCTGGAAGCCCGGAAGCAGGAGCAGGCCAGACACCAGCAGAGCCTTAGGATGCTCTCAGAAGAAGTCTCTCAGATTCAAGAGGTCAGATATTGTTTGAAGAGCTTGAGGGAGCAGATGGCAGCTAAAAACAACCACAGAACAGAACACAAGttGCAGTTGGTGCGCAACGGTGTCAGCAGAGTGAACGGCGCCCCATCATCAACAGCGCACGACAGCGAGGACAAACAGgAGCCAGTGGACGAGCAAGAGCGAGCGAAGATGAGGGAGGTTAGTAAACGGCTGTACGCTCAGCTGCAGGACGCAGAAAAAAGACACcaggaggagaaagaaaaactaCAGgcGGAGGCCGGTCAGTATAAGCGGCAGCTCTCTGAACAGAGCGAGCGGCTGAAAGATGCCCAGCTGAACGCAGAGCGACAGGACGAGAGAATCGAGGAGCTTCAGAGGCTGATGGGAGGGATGGAGCAGGAGAGCTCCACGCTGAAGGAGGAGCTAATGACCCGGCAGGCGGAGCTGCTGCAGCTGCGGGAGATGAAGGAGGAGGGACAGGCTGAGAAGGAGAGGTTAGAGCAGTTGGAGAGGGAGAATGCCATCCTGAAAGAGAAAATTCATCACCTTGATGATATGCTGAAAAGCCAGCAGAGGAAACTCAGGCAGATGATCgagcagCTCCAGAACTCCCGTATGATGATTCAGGAGCGAGACCGGATCATTAAAGAACTGGAGGAGAAAGTGGCTTTCCTGGAAGCAGAGAACAGGGAGATGCGTGATCAGATGGACTACTATGCAGGTGGTCATCGGTCAAACTCGTACTTGTCAGATCACAACGCTCAGATTGTCTACAGCAAACCTCTGAAACCATCCGGTCCGAGCAGCAAGAGCCTACCGTTCATTAAAGTGATCGAGATCAAATCGTGAAGAGCACCACTGCACCATGAGAACCACGGGTCCACACCTTTCTACAGAATCAACCACAACAGCCCACGCTGCCCTCCATCACTGCACAGCTATTCCACAACAAACCGGAGCAGCTTGAATTTCTGCTTCATTGTCAAACTAACTgactgtgtgtcagtgtgtgtgtgaagctttgttttattgttattagtgtatacataaacatatacacacagatatTTAAAAGATATATATGTAGGTTTTCGGTTACAGTTCGGTGTGAATAGATAGATTGATTAGCATGGTAggtgtaattttttaaatttttattattattatttactgtagcaCACGACCTGACATGACGTTGCCTGCATGCTAACACTGACCCAGACTCAGCTGAAGTATGAGTTCAGGCGAGTTCATAATTTAATCCTAATGAAGAAGTTGAGCAACTAAACCGAAATGAAGAAATATGGGAGAGGAAAGCGTGAGGAAGGAGTGAAttaatccgttttttttttttttcttttttttgaggcTGGCCCTCCAAAACACAAAGTCCAATCTctctgtgaatgtgtgtgtgtgtgtgtatatatatataaatagtctGACAGATTGTGGCGTATAATCCCCTCGTTCACTCACTCAGCTTTCCCTCAATTAAATGACCTTAATTAATCAAACAATCAATTCTTTCTAATCTTTCAGATCTGGAGATTACAGTTAAGCAGCAGATCTGTATATGGGCTTTATGGGCTTGTGCAGTCGTCTCTTGTCTTTATGAAGGAAAGCGAGCCTATCCGTGTGGCGCCAAGTGGAATATGGCCCAGCTTCTAAGCTAAAACTGCTGGGGCCAGGCGCTTAAAATAACCAGCTAAGCCGACTTTCAAGTCAAAGTCTTTAGGCCAttcagaagacaaaaaaaaaaactgaggcaGGCCTGAACATGAAACAGGAAAGGTAAGGCCCGGCCCGGCCTTGCTGCTGTTGTTTAATAACGGCACCATGGTGACCTGCAGCCATTGAAACTGCTGTGTTTGCGCTGCTTAGATGAGTTTCGTGCTCAGGCCTTGAGCAGAATGGGTTTTGTGAGAGCAGACTAAGCCTGACTAAGATCTGTCAGCTTTTAATCTTCTACTAACATCTCAACATTAATGGTTTTTGTTTCAATAAGGCTTTGTCTCAGCTGGCTTAAAGACAAACTGGCACAATGAAGAGTCATAATGATGTCTGAATCATATTACCTAGACTTTGATACCGATATACGATGATACTGAACACACTATGATACTAATTTTTTAGTAATATCCAAAAAAAAGGAGCGAAACTTAAACAGTAACGTAGAAATAGTACAGCAATTTAGTGCTCAGTATGTTTTCTAACAAACTACATCCAGCCAGGTACTGAAATTTGATTGTGAATTATTAATTTTGTACTAATTTGTTCATTACCACACTGAATTTAATACCTATCAATACCAATATCAAAatctattgtattatattatattaagtatTTTCCTCTGCATTTGGTTCATAATATTACTGTGTTCTGGAACAAAAACTAAATGTATAGTTAGACAGTGGGTTGCTGCACTGAAAtggcactttttaaacatcacactacatttattacactaatttagctcagctaatgttaaggttaattttaaatcattaaaaaaaatcaaatgtttgACATAAGGATGGGTTAAAAGAGATATGTATGAGACTGTTTTTAGCTTCTACCTAAAGCTAGCATTAGCCACAAATCATAAGTCATTAAGTTggtttagttaattaattaccTGTACTAGCACTAACATTAGCAATGTAGGCTCgtataataaaacactgttgaAAAACATTCACAAACTACAACAAAACACAGTCAAAATGCGATGTTAGAGCTTCTAAATGGTAAAGAAATACTATCAGGTAGTATATATTAGGTAGTAAAAAGCCCTTTGCCCACCAGACAccctcccttcctccctccctccctctctgctCTGTCTGCACAAACAGTTTATTGGATTATATATTAGTAAATATGCCCCAATAGAAAGCACAGAGTCATGCCTTCATTAAACAGCACTACCCCTAACCAAACAAGAGGAACGAATAGCGGTAAATGAGTATCAAACTCTAATGAAACACGGTTCAGAGATCAGTCTGTTAAAAAAAGGCATTTCAGCTTTCAAACGTTTCGCCCAAACtcccatcatcatcaccaagcttttgtatatactgtatttatggcGTACGAAAtctttctattttctttctACACTTCTGCAAACGTCCGTCCTTAAAACGGGCTTCCTTACTTACTTATTGCaattttctctgttctctatTTAATATAAAGATTATTTTTGTAGTGAAACCTCGGCGCAGTCTTAGAATTATTGATGTATTAATTGCtatgcatatttatatgtaAGATGTGTGTGATTTGAGATTAAAGTTAAGTGAAGTAAA

Function

symbol description
tuft1 Predicted to be involved in intracellular signal transduction. Located in cytoplasm.

NR:

description
PREDICTED: tuftelin

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007255910.3 False 3671 mRNA 0.42 12 5843859 5861034
XM_007255912.3 True 3767 mRNA 0.42 12 5843859 5869292

Neighbor

gene id symbol gene type direction distance location
LOC103043753 NA coding downstream 8138 5818036 ~ 5835721 (-)
aqp10 LOC108429989 coding downstream 25825 5809955 ~ 5818034 (-)
atp8b2 atp8b2,LOC107677029,LOC107714674,LOC107667702 coding downstream 34899 5757649 ~ 5808960 (-)
il6r NA coding downstream 92422 5735252 ~ 5751437 (-)
setdb1 setdb1,LOC107723461,LOC107582057,LOC107671207 coding downstream 319249 5503088 ~ 5524610 (-)
cgn LOC108443682 coding upstream 9262 5878554 ~ 5920478 (-)
LOC103045680 LOC108441953,LOC107677025,LOC107594934,LOC107714712,LOC107673706 coding upstream 119206 5988498 ~ 5992273 (-)
LOC103046199 LOC103046199 coding upstream 147614 6016906 ~ 6020186 (-)
LOC107197791 NA coding upstream 153388 6022680 ~ 6034772 (-)
pbxip1 NA coding upstream 170462 6039754 ~ 6054922 (-)
G97736 NA non-coding downstream 762 5765597 ~ 5843097 (-)
G97769 NA non-coding downstream 6377 5836429 ~ 5837482 (-)
G97756 NA non-coding downstream 106433 5736436 ~ 5737426 (-)
LOC111193430 NA non-coding downstream 121608 5720071 ~ 5722251 (-)
G97745 NA non-coding downstream 153321 5690134 ~ 5690538 (-)
G97739 NA non-coding upstream 6190 5875482 ~ 5878161 (-)
G97770 NA non-coding upstream 53499 5922791 ~ 5923343 (-)
G97790 NA non-coding upstream 130437 5999729 ~ 6000594 (-)
G97791 NA non-coding upstream 136565 6005857 ~ 6006533 (-)
G97784 NA non-coding upstream 187763 6057055 ~ 6116383 (-)
riiad1 NA other downstream 250363 5590982 ~ 5593496 (-)
G97717 NA other downstream 257193 5578562 ~ 5586666 (-)
LOC103028279 NA other downstream 269955 5540913 ~ 5573904 (-)
dek dek other downstream 1390857 4444229 ~ 4453002 (-)
LOC107197182 NA other downstream 1665433 4150003 ~ 4178426 (-)
LOC111193431 si:ch211-105c13.3,LOC108441945,LOC107594941,LOC107673711,LOC107582067,LOC107677027,LOC107735771 other upstream 90029 5959321 ~ 6012784 (-)
G97793 LOC103046199 other upstream 146551 6015843 ~ 6022883 (-)
LOC103044954 LOC103044954,LOC108429942,LOC100705775,LOC107699547,LOC107589412,LOC107582081,LOC103388254,LOC107599504,LOC103356523,LOC101077558 other upstream 974194 6843486 ~ 6850838 (-)
LOC111193437 NA other upstream 1815474 7684766 ~ 7709505 (-)
LOC103043934 LOC103043934,LOC108429921 other upstream 1899837 7769129 ~ 7779284 (-)

Expression


Co-expression Network