LOC107197791


Basic Information

Item Value
gene id LOC107197791
gene name NA
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035907.1
NCBI id CM008310.1
chromosome length 11650534
location 6022680 ~ 6034772 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022674042.1
aaaaaaacatgtcattTTTACCATAGGTACACTTCAACTTTAAGAGACACAAACAAGTCTTttctaattattaaaaaaataataataatctgctttttattgcatataataAGTGTatgatacagtataaaaaaacataatattttcaACAGAAACTACAGTTGTTTGCAATTACAGTGGTCAGTTTCCTGTAGTTCACTTTCAGATAGAGTTATGGGTATCATTGAAAGacttatttgcatattgtgatgacTTGATTGCGTACTAAAGTACACGGAAACATAATCCACGCATATAGCAGAGTTATATAACCTGAGAGGAGctacagaggcagaaattaccatgATAAAAGTGCTTTCTTTTAAGGAtagaaaatgtttatacaatttttaagcaggactgataTGATTCATTACTTTATATGAACAAATTTTAACTATTAATGGACAAAATACTACGATTTGGGAGAAGATTTGGAACTTATTGACTTGGTTGTAGGTTCCAGTCCTCAGGTTTCAGTCTCAGTTTAAATAAAGTCGCATTTTTGCACCCCTGCCTTTTTCCTCCTGCATAACACAGTAGTACGTGTgaatttctgtttgttttttttgtttttttaatgaaacagaAGTAGAGGAACAATCTACCTTATTGTTTGCAGAGCAGCAAGGATGGAGAACCAGCTGTGGGTCAGAAAGTAACTGAAGAACCTCAGAATCTGGGTTTTTAACCTagcgtttattttattttatttttttatggaaaatCGCAGACCATCAACTATGGATTTGCCTTTTTTCCTCTGGTTGACCTTCATACTGTCCTCCAGCATCTCCAGATATGATGTTTGTGCTCTCATTGCTAAACACTGTGTGACCTTTGAAGAGCATCTTCTCGGAGACATTGGTGGAACTGTCCCTTGTTCCCATCACCCAGGACTTGGACCCTATGGAGAATGCAACATTGTGGATTTCCAAACCGATCTGCAGGAAGTTGAACCAGGAATCAGGTCTCTGTGTATCTACTTCCTCTTGGCTGAGGTCATTCCTGACAATGCTTTTTCGCACCTACCAACCTTGGAGTTCCTGTATATAACTGGAAACAGTCTGAAAAGGGTTCAATCTGGTGCCTTTTCCCAACTCTCTAACCTCAGGTATCTGAGTTTGCTTTTAGACGACAGGGGATGCAGCAGTGTTGCAATGGACTCTACTGTCTTTGCTGGGTTGAGTCGATTGGAAGAATTGTCTTTAGAAGGTCTGAGGTGGACTTTTATGGGTGTTTCCAACGCCACATTTGACCCTCTCCTCTCTTTATCTAAGCTGTCTCTAAACAGGATTTGCCTTCAGGAACTTGCAGAGGTTTTTTGTCATCTTTCAAATAGAATGTCTTACTTGAAACACCTCAAAGTGATCAACAGTGGCATCACTTCAATCAGGAACCGGATGCCCGGATGCCCAGGATCTTCCAAACCATGGCCTTCAAACATACTTGCAGGGGTGCAAACTCTAGACCTCAGAGAGAATGAGATTAAAATCATTGAGGCGAATTCTTTAAGAGTCTTTCAAAACCTTTCGAGTCTCACCTTAAGCTTTTATGGCGTTTGGCTCGGAAGCATTTGGGAGTCTGGAGTTGGAGAGGTCAGTGAGTTTGAATTGGCCGGGGTTGTTTTAAACGagtatcaaacaaactttaaggACTTGTGTCGTCTAGTTTCTCGATTAAACCTTCAATCTCTTGTGCTTACTTTTGTAAAAGTGCGCAAATTGTCTGCCGAAGATGTGAAGGACTGTGGGAAAGGTCTAAAAGAGCTTTCGATATTCAATTCAAACATACAGGAGCTGGACTTAGGGTTCTGGACAAGCATATTAAGTACCAAGGTCTTGCACATGACCAACACAGGACTGACCACAGCCCGGTTTTGCGATGTCGCCAATGGAACCATGGAACTGTGGATGGAATTGAAGACTTTGGGTCTTGGGAACAATCAGATAAAGACAGTCGAAACCAACCAGTTTCTTTGCATGCCTCAACTTGAGCAACTTCTTCTCAATGACAACAAGATCCAAACTTTGGAACCTGGAGCTTTCAGAGGTTTGCTTCAACTTAAAGTTCtcaaactcaactcaaactcaaTCAAGATGCTCGCTGCCGACGACTTCCGTTCACTCTGGGCTCTTGAAATCCTGCTGATTGACAATAATGTAATTGAGAGTATCGATCATGGAACGTTTAGAGATCAGAAGGAACTACGAGAGCTGACATTTGGTAGACTGGAGTATGTCTATACTCTGCATCTGAGTTTGCTGTTTTACGGATTTCCAGAGAAAATGCAGCGTCTCAGCATCGATGCACATTATGGGACTACTATCTACGCAGGCGATGCAGGACGACCCAATGATTCCTTCGTATTAGAACTGAACGGAGACGTTCTCAACATGGGTGACTTGTATTCTCCGTTCCTCGAGTCAGTCCGAGAGCTCAAACTCAGTGGAACCACCTTCTTTTTTAAGTGTTCCTTCTTTGTGCCGTACTTTTCCAATCTGGAATCTCTGGAATTGCTTGGGAATCCCGAGCGGGTGCACGTTAACTACTCTGGAATTAGCAGTTTGCGTCAACTAAAGAAGCTCAAACTCATCAATCTCAACTTCTCCAACCACACGAATCCTGGAATGACCTTCTGGAACCTAAAGATGCTCCGTATCCTCGTGCTCCACGACTGTCACTTTAGTTTCCTGACCAAGCGAATGTTCAGAGATCTGCGGTCCCTGCAGCTGCTGCGACTCTACAGCTCCAGCCCGTTGATTTTACACGATGGGATGTTCGAGGTTCTTCCAGCTTTAAGAGCAGTGGTGTTTGACCTCGTGGAGTTTCGCTGCGATTGTGAAAACGGCTGGTTTCTAGACTGGGCAGAGAGCTCCAAGCAAGTGCAGGTGATTCATCTGCAGCGTCAGCAGTGCGTTTGGCACTACCAGAAGCGTGATTACCTCTCCACCATGGAGAAGCTGTGTCAGACAGATGTGCAGTACCTGTGCTACCTGTGCTCATCCATCGCCATCGCTCTGCTGCTGTCTGCTTCCGTCGGTTATCGCTTTGCGTACTGGTCCTGCGTGGTTCTCTTCTTCCGTCTGAGGGGATATGTGGAGAGGAAGCTTGGCAAGAAGCGGAggataaaaagaagaagaagagagaggcaGGGAGACGGGGAAGTGGAAGTACAggtggaagaggaagaggagatgAAGTTTGATGCATTCGTGTCGTTCAGTAGGCATGATGAAGCCTGGGTTTTGGGGGAGTTGGCGCCAAGACTGGAGGAGCGAGGTCAGCCCAGGCTGAGACTGTGCCTGCACAGCCGGGACTTTGAGGTAAAACtgttaaaagtaaagtttctcaTTAAAACTAGAACACAGTTTGTGGGTAAAGGAATAGTGAATAATATCTCAGAGAGTATCTACAGGAGTCGGCGTACAGTGTGTGTGCTGAGTCGTCAGTATCTGCGCAGTGATTGGTGCAGCCTGGAGATGCGAGTGGCGACCTACCGTCTCCTGGAGGAGCAGGAGCATTCCCTCATCCTCATCTTCCTCCAGCACATCTCCCCCTTCCAGCTCACCGCTTTCCACCGTCTGGCCAGGCTGGTGAAATCCCGCACTTATCTGGACTGGCCGCAGGACGAGAGCGAGAGGATTCACTTCTGGGAGCGTCTGAGGAGAAGCATCGCAGATGAAGAGATGTTCAGCTGCTATCGAAGTTTCAGATCTTCTTATCTTGTCATCATTGAGAAGACGACCATCTCTTCTCTAagaagaagatttttttggcTTATCTTTGGTCATAAATCCAAAATGTTCCAGAGCCTGAAGCTTCTTCTGTGTTTCAGCCTCTGCGATGTTTCTTTTGCTGTTATTGCTCAACATTGTTTTACCTTTAAGGAGCAAATCCTCAAAGATATAGGAAGTACCTTATCCTGCGATCATCGTCCAGGACATGGAGATTATGCAGAATGCAACATCTCAGACTTCCGCTCAGATCTGACGGAACTCACACCAGAGGTCAGGTCACTCTGTATCTTCCACAAGGCAAAGATGATTCCAGAAAAGGCGTTCTCACAATGGCCGTCGTTGGAAATTTTACGTATCTTTGGAGAGCAGTTGAATGGGATTATGTCTAAAGCCTTCATTGGCCTCTCCAACCTAAAGTTCCTGAAGATTACCTTCGATTCTTCTTCCAAATGTCGCAATGTTTCCTTAGAAGATCAAGCGTTTGCTGGGTTGGAGAACTTACAGGAGCTGGAACTGACAGGTTTCCAGTTTAAGAACATTTCCAGCTCAACCTTCAACCCTTTGAGGGAGCTTGTGAGTTTGAGGTTAGCAGGGGTTTGTGTGAAGGAGTTGAGTGAGGTGTTTTGTAGTCTCAGTGATAACATGGCTCTACTACAGCATTTGTCTCTGGAGGACAGTGGAGTTTCAACCATAGATAAGCAGGATTGCATGGCCGAATCTGCTGTGCTTGCTGGAGTCAAGGATTTAAATCTAGATGGGAATCCCATCCAGGTGATTGAGGAAGATTCTCTGAAGGTGTTTCAGAATCTTTCCAGCCTTTCTTTAAAGCTCCTTGAACAGTTTGAGTCAAGGAACAGCATTTGGAAATCGGGAATTGGCCAGGTCGATAAAGTCCGCATTTCTGGACCGAAGTCTAAAGGGCTCATCAATGACTTGTGCAGCATGACCGCTCATCTAAGTGTGAGAACCCTTGAACTATCTCAAATCGCAGTGGATATGTTGTCTGAGAAAAGTCTACAAAACTGCAGTAGGCATTTGAAGACATTGAGCATCTGTAGCTCCAAGATTCAACAGATCGACTTCAGATTTTGGAAGGTTGCAGCAAATATCGAATCCCTAACAATGTCCGACATGGGTTTAAAAGAAGCGTCATTTTGCAAGGGCGCTAATGGTACCATTTGGAACATCACCAGTTTAAATCTAGAGAACAACCTACTCAAGGAGGTTCACGCCAATCAGTTCGGCTGTATGCCTTTACTGGAACGACTTGTACTCAGCAGAAACTCCATTGAAACTCTGTTTCAAGACGCCTTGAGTGGTCTACCAAGACTCAGGACTCTGAAGCTTAACTCAAACAAGATCAAGCAGCTTTCCTACACAGACTTTGAGTCTCTTTCTGCTTTGGAGATCCTGCTAATTGACAATAATACAATTCAGAAGATTGAAGAAGGTGCATTCAGGAAGCAAAAGCAGCTACAGGAGATGACCTTAGGCACTCTGTTGTTCCCTGAGCTGTACCTTACCATGATTTTTTACGGCTTCCCACCGAAAATGCAAAATCTCAGCATCGAAACTGGACACCACACAGCCCTTCTCCACTTTGGCGTAAATCCGACCCCTGAGAGACTCTCTGCTCTAAACCTAAACATATTTGGCATATATATCGATGACTGTAACAATACACTGCTCAAGCGAGTACGAGAACTGAAGTTGATGGCCTATTATATTGCCTGCGATTTTCACTCCTTTTGGACCTTCTTTCCAAACCTTGAATCCTTCGAGTACAAGGGCGACAGCGAGGGACATTCGGAAACGTACGGCGACATCAACACTCTGCGCAATCTGAGACGTCTCAAACTGACCAGTCTCAATTTTGCCAACAACTCAGAAACCGACATGATGTTCTGGAACCTCAAAAAGCTCCAGGTCCTCACGCTGGTGAACTGCCACCTCAACTTCTTAACGAAAAGCATGTTCAAGGACTTGCTTTCTCTGCAATTGTTGCGCATAGACCTGAACAACCCTCTGACTCTGTTGGACGGGATGTTCGACCCCCTGCCGTCGCTGAGAGCCATTGTCCTCGACGAGTTGGACTTCCGCTGTGACTGCGAAAACAACTGGTTTCTAGACTGGGCAGAGAGCTCCAAGCAAGTGCAGGTGATTCATCTGCAGCGTCAGCAGTGCGTTTGGCACTACCAGAAGCGTGATTACCTTTCCACCATGGAGAAGCTGTGTCAGACAGATGTGCAGTACCTGTGCTACCTGGGCTCATCCATCGCCATCGCCCTGCTGCTGTCTGCTTCCATCGGTTATCGCTTTGCGTACTGGTCCTGCGTGGTTCTCTTCTTCCGTCTGAGGGGATATGTGGAGAGGAAGCTTGGAGGGAAGTGGAggataaaaagaagaagaagagagaggcagggagacgaggaagtGGAAGTACAggtggaagaggaagaggaagaggagataAAGTTTGATGCGTTCGTGTCGTTCAGTAGGCATGATGAAGCCTGGGTTTTGGAGGAGTTGGCGCCAAGACTGGAGGAAGAAGGCCAGCAAAGACTGCGACTCTGCCTGCACAGCCGGGACTTTGAGGTGGGTAAAGGAATAGTGAATAATATCTCAGAGAGTATCTACAGGAGTCGGCGTACAGTGTGTGTGCTGAGTCGTCAGTATCTGCGCAGTGATTGGTGCAGCCTGGAGATGCGAGTGGCGACCTACCGTCTCCTGGAGGAGCAGGAGCATTCCCTCATCCTCATCTTCCTCCAGCACATCTCCCCCTTCCAGCTCACCGCTTTCCACCGGTTGGTGACCCTGGTAAAATCCCGTACCTATCTGGAGTGGCCAGAGGACCTGGCTAAGAGGGAGCACTTCTGGGAATGCCTGAGAAGAAACATAGTTAAGGGGGACATggtaagagaagagaaaatgtaaaatacaagtATTcgctgattttactatttaaaggttta

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022674042.1 True 6754 mRNA 0.45 6 6022680 6034772

Neighbor

gene id symbol gene type direction distance location
LOC103046199 LOC103046199 coding downstream 2494 6016906 ~ 6020186 (-)
LOC103045680 LOC108441953,LOC107677025,LOC107594934,LOC107714712,LOC107673706 coding downstream 30407 5988498 ~ 5992273 (-)
cgn LOC108443682 coding downstream 102202 5878554 ~ 5920478 (-)
tuft1 tuft1 coding downstream 153388 5843859 ~ 5869292 (-)
LOC103043753 NA coding downstream 186959 5818036 ~ 5835721 (-)
pbxip1 NA coding upstream 4982 6039754 ~ 6054922 (-)
lenep NA coding upstream 22285 6057057 ~ 6059929 (-)
shc1 shc1,LOC107714692,LOC107723450 coding upstream 29462 6064234 ~ 6116221 (-)
LOC103031124 LOC108429931 coding upstream 110511 6145283 ~ 6231802 (-)
trim46 trim46a,trim46,LOC108429934,LOC107714687,LOC107723477,LOC107582073 coding upstream 491575 6526347 ~ 6547286 (-)
G97791 NA non-coding downstream 16147 6005857 ~ 6006533 (-)
G97790 NA non-coding downstream 22086 5999729 ~ 6000594 (-)
G97770 NA non-coding downstream 99337 5922791 ~ 5923343 (-)
G97739 NA non-coding downstream 144519 5875482 ~ 5878161 (-)
G97769 NA non-coding downstream 185198 5836429 ~ 5837482 (-)
G97784 NA non-coding upstream 22283 6057055 ~ 6116383 (-)
G97786 NA non-coding upstream 27085 6061857 ~ 6105163 (-)
G97802 NA non-coding upstream 107936 6142708 ~ 6143668 (-)
G97833 NA non-coding upstream 348889 6383661 ~ 6383987 (-)
G97837 NA non-coding upstream 376021 6410793 ~ 6411000 (-)
LOC111193431 si:ch211-105c13.3,LOC108441945,LOC107594941,LOC107673711,LOC107582067,LOC107677027,LOC107735771 other downstream 9896 5959321 ~ 6012784 (-)
riiad1 NA other downstream 429184 5590982 ~ 5593496 (-)
G97717 NA other downstream 436014 5578562 ~ 5586666 (-)
LOC103028279 NA other downstream 448776 5540913 ~ 5573904 (-)
dek dek other downstream 1569678 4444229 ~ 4453002 (-)
LOC103044954 LOC103044954,LOC108429942,LOC100705775,LOC107699547,LOC107589412,LOC107582081,LOC103388254,LOC107599504,LOC103356523,LOC101077558 other upstream 808714 6843486 ~ 6850838 (-)
LOC111193437 NA other upstream 1649994 7684766 ~ 7709505 (-)
LOC103043934 LOC103043934,LOC108429921 other upstream 1734357 7769129 ~ 7779284 (-)
LOC103044427 NA other upstream 1746708 7781480 ~ 7808142 (-)
prelid3a prelid3a,LOC107715058 other upstream 2432404 8467176 ~ 8475912 (-)

Expression


Co-expression Network