LOC103027841


Basic Information

Item Value
gene id LOC103027841
gene name NA
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035907.1
NCBI id CM008310.1
chromosome length 11650534
location 3121918 ~ 3129164 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007232023.2
GATGACTCAAAACCTTATCTCCCCTGCAGGGATTTTTGCAGCGCATCCAAATGCTCTAAGACAGTGACAGGAAGTCTCACCTCACGCATACATCTACATCtgcaactcaaaaaaaaaaaatgtgtacacACTCATTTTTACAGGAAATTTACTTCAGATGAAgcttgagaaaaagagaaagatgaaaTGCCCTTGTCTCAGTCACGCACAAGAAAAGGACGATAGTCCCAGCTTCTAGCAAATTCAACAACTTTTCCAATATGGAGGCAACCCGGACCACAGAAAGAATGAACACAATGGATACCACCATCACTGATTATTATGATTACCTCAATGACACACAACCATGCGACACCAACGTATCTCTCCTGAACCCGGCCGTCATGACCGTCATCTTCTATCTGGTATTTGTCCTGGGTCTGCTAGGCAACAGCATGGTCCTGTGGGTTCTGCTGAAGGTGATGCGCCTGAAGACCATGACGGACGTGTGCTTGCTGAACCTGGCGCTGTCTGACCTGCTGATCGTCCTGTCGCTGCCTTGGTGGGCCCTGTACAACCAGGGTTATCACTTTGGAGCTCATGCTGTCTGCAAGGCCATGGCGGGCGCCTACAACTTGGGCTTCTACAGCGGTATCCTCTTCGTGACGCTGATGAGCGTTGACCGCTATTTGGCCATCGTTCACGCGGTGTCGACCATGGGGGCGAGGACACTGCGCTACGGAGCAGCTGTGAGTCTTGTGATCTGGATTATCTCCTTCTGTGCTGCGCTTCCAGAGGCCATTTTTGCCGGCATGACCTTCGATAACAATGTCACTCAGTGCTCGAAGATATATCCGTCCAAACAAGTGAAAGCGTGGAAGCTGTTCCGCAATTTCAGTGAAAATACTGTAGGCCTCTTCATCTCCTTGCCTATCACAGTCTACTGCTACATCCAGATCCTGCTGGTCCTGAGGAGGATGAAGAACTCCAAAAAAGGTCGAGCTATGAAGCTAATCTTCACCATTGTCGCTGCCTTCGTGACCTTCTGGGTGCCGTACAACGTGGTGGTGTTCCTGCAGACCCTGCAGCACCTGGACGTCATAGACACATGCAATGGCATTCGATGGATCACTGCCGCCTTGGGGCTGACCGAGACCCTCGCGCTTGTCCACTGCTGTGTGAACCCAGTGATTTATGCCTTTGTTGGAGAAAAGTTTAGGAAATGTCTGGCTGGCATGGTTTCAAAGTATCTTTTCAAGGTCTACCAGCCCACGCCAATTCACTCGAAAACCTCGGACGAAACATCCAACACGATTTTGTAAGAGGCCAGAGACTTacgtatttgtatatatttttttatattattttttataaattttgaACTATAGACTGTCTAAAAAGAAATGTACTACTTAGGACTTACTAGCCAGAAAGATCAGGGatgattgtgctctctcggactccggctgctgatggcatgatcaaggattcaaggatttgAACCTGGAATCATAGTGACAGTGCCTTACTTaatctgctggaccacttggggCCCCCACAGTACATCCTCTATATGCCCCTTAACTAACTGTCCCAAAGACTGTATTGTACATAATGTTTAATACCAATCAGTTAGCCATCCGCCTTCCTGACAGATATGCTTTGAAGAGTTTGGAAGTTTGAGGCTCTGAGCTCAAGTCAAAGGTAAATTATAAAGGGTCTTCTTTTACCCCAAAGATTGTTCACGGCAACTGTAATTGTAAATAGAAAGACATCATAAAATTTCTTTAAAGATGTA

Function

GO: NA

KEGG:

id description
K04183 CCR8, CDw198; C-C chemokine receptor type 8

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007232023.2 True 1777 mRNA 0.46 2 3121918 3129164

Neighbor

gene id symbol gene type direction distance location
LOC111193412 NA coding downstream 31785 3076470 ~ 3090133 (-)
LOC111193413 NA coding downstream 58199 3060719 ~ 3063719 (-)
LOC103034089 LOC107751901 coding downstream 406362 2498065 ~ 2715556 (-)
LOC111193409 NA coding downstream 822405 2297260 ~ 2299513 (-)
LOC111193410 NA coding downstream 850341 2270503 ~ 2271577 (-)
LOC103028160 NA coding upstream 8146 3137310 ~ 3141905 (-)
LOC103033089 NA coding upstream 312500 3441664 ~ 3452698 (-)
LOC103032775 LOC108429167,LOC107739006,LOC107548909,LOC107697901,LOC107712821,LOC108272764 coding upstream 324931 3454095 ~ 3501309 (-)
rab11fip3 rab11fip3,LOC108429222,LOC107556639,LOC107677234,LOC107717866,LOC107554161 coding upstream 377032 3506196 ~ 3568985 (-)
LOC103033958 decr2,LOC107667207,LOC107677236 coding upstream 441752 3570916 ~ 3582993 (-)
G96760 NA non-coding downstream 868 3120279 ~ 3121050 (-)
G96759 NA non-coding downstream 13786 3107782 ~ 3108132 (-)
LOC111193415 NA non-coding downstream 24837 3096143 ~ 3097081 (-)
G96754 NA non-coding downstream 35778 3067498 ~ 3086140 (-)
LOC111193414 NA non-coding downstream 49134 3071095 ~ 3072784 (-)
G96803 NA non-coding upstream 18201 3147365 ~ 3148917 (-)
G96828 NA non-coding upstream 143612 3272776 ~ 3273102 (-)
G96830 grb10,LOC103031323 non-coding upstream 157703 3286867 ~ 3329546 (-)
LOC111193416 NA non-coding upstream 193038 3322202 ~ 3340834 (-)
G96836 NA non-coding upstream 230099 3359263 ~ 3435984 (-)
LOC103031019 NA other downstream 1306884 1811701 ~ 1815034 (-)
carmil1 carmil1 other downstream 1343818 1582007 ~ 1778100 (-)
LOC103043490 NA other downstream 2856324 252340 ~ 265594 (-)
mboat1 mboat1 other upstream 749532 3878696 ~ 3899248 (-)
LOC107197182 NA other upstream 1020839 4150003 ~ 4178426 (-)
dek dek other upstream 1315065 4444229 ~ 4453002 (-)
LOC103028279 NA other upstream 2411749 5540913 ~ 5573904 (-)
G97717 NA other upstream 2449398 5578562 ~ 5586666 (-)

Expression


Co-expression Network