G133841


Basic Information

Item Value
gene id G133841
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035911.1
NCBI id CM008314.1
chromosome length 35718434
location 22542318 ~ 22544146 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU181005
GGATAAGAACACCACCTGCTCTGCGCCACTCCTTTGGAATAATCCCCTTCTTCCACACTATAGCCATTAGTTTCCATAGAAACTTCAAAACATCTGGTGCActtttatataatctatatgGAACCCCATTTGGCCCTGGGGCAGAACCTGCctttgcagccttcaccacctccTGAACCTCACTCCACCTAGGGGGGTTAACATCCATCTTCCACTCTATATCACCTAACGGCGGCATGTCTGCTGGTAGGTCCAGGTCGCTAGACCTTTCCTTCTCTGTGTAAACACTCTGAAAGTGCTCCTCCAACTCCCTCTTTCCGACCTTTAGATTTCCTGATTTCTCCTTACTAAACAGACTCTTAACAAACCTAAATGGATCTCTAAAGAACTCTATCCTAGCACgctccttcttcttcctccttttcctcaTAGCCTCTGCTCTCCGCAATTTCACCAACTTACTTCTCAACTCCTCCTGCAATAACTCAATgccctctctttctgcctcattCCCCTTCTTCCACTTCTTTCTGAGTAACCTTGATTCCTTAACCAGTTTTTCTATTTCTACCTGCCGCCTTGATTTAACTACATCTTGACACTTTACGTTCCTCTGCACAACACCAAATCTTGCCATTCCATAATCATAAATGACTTTACCTAGCCTGTTCAATTTACTCTCTGCTGTTCCCTTCAAACCCTCCAACATACCTTTCAAATCATCATTAATACTCCTCCATGCCATCTTGTCTCCTGTGCCTGGCCATTTAACTTTGGATCTTTGACCGATTCCTTTCTCCCTACCCATCTGCT
>TU181006
GGATAAGAACACCACCTGCTCTGCGCCACTCCTTTGGAATAATCCCCTTCTTCCACACTATAGCCATTAGTTTCCATAGAAACTTCAAAACATCTGGTGCActtttatataatctatatgGAACCCCATTTGGCCCTGGGGCAGAACCTGCctttgcagccttcaccacctccTGAACCTCACTCCACCTAGGGGGGTTAACATCCATCTTCCACTCTATATCACCTAACGGCGGCATGTCTGCTGGTAGGTCCAGGTCGCTAGACCTTTCCTTCTCTGTGTAAACACTCTGAAAGTGCTCCTCCAACTCCCTCTTTCCGACCTTTAGATTTCCTGATTTCTCCTTACTAAACAGACTCTTAACAAACCTAAATGGATCTCTAAAGAACTCTATCCTAGCACgctccttcttcttcctccttttcctcaTAGCCTCTGCTCTCCGCAATTTCACCAACTTACTTCTCAACTCCTCCTGCAATAACTCAATgccctctctttctgcctcattCCCCTTCTTCCACTTCTTTCTGAGTAACCTTGATTCCTTAACCAGTTTTTCTATTTCTACCTGCCGCCTTGATTTAACTACATCTTGACACTTTACGTTCCTCTGCACAACACCAAATCTTGCCATTCCATAATCATAAATGACTTTACCTAGCCTGTTCAATTTACTCTCTGCTGTTCCCTTCAAACCCTCCAACATACCTTTCAAATCATCATTAATACTCCTCCATGCCATCTTGTCTCCTGTGCCTGGCCATTTAACTTTGGATCTTTGACCGATTCCTTTCTCCCTACCCATCTGCT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU181005 True 813 lncRNA 0.45 2 22542318 22544146
TU181006 False 813 lncRNA 0.45 2 22542318 22544146

Neighbor

gene id symbol gene type direction distance location
LOC103041770 NA coding downstream 169601 22370053 ~ 22372717 (-)
LOC111194118 NA coding downstream 204368 22332994 ~ 22337950 (-)
gata5 gata5,LOC107681871,LOC107747495,LOC107690861,LOC107559469 coding downstream 373873 22159793 ~ 22168445 (-)
rbbp8nl NA coding downstream 443169 22074057 ~ 22099149 (-)
hck hck,LOC107747493,LOC107690859,LOC107681869,LOC107707747 coding downstream 482098 22027392 ~ 22060220 (-)
LOC103039708 sdcb1,LOC108435221,LOC104919459,LOC106572119 coding upstream 265165 22809311 ~ 22837730 (-)
LOC103038563 NA coding upstream 315527 22859673 ~ 22890067 (-)
LOC103037932 NA coding upstream 373269 22917415 ~ 22933884 (-)
LOC103033828 dnmt3bb.1,LOC108435229,LOC108276083,LOC107672053,LOC107657059,LOC107563667,LOC107747976,LOC107603157 coding upstream 394342 22938488 ~ 23003135 (-)
LOC111194042 NA coding upstream 716494 23260640 ~ 23268258 (-)
G133828 NA non-coding downstream 29385 22512618 ~ 22512933 (-)
G133825 NA non-coding downstream 46005 22496076 ~ 22496313 (-)
G133822 slco4a1,LOC107838369,LOC102216411,LOC106572122 non-coding downstream 62065 22479839 ~ 22480253 (-)
G133821 NA non-coding downstream 63195 22478879 ~ 22479123 (-)
G133808 NA non-coding downstream 124149 22412537 ~ 22418169 (-)
G133843 NA non-coding upstream 1879 22546025 ~ 22546933 (-)
G133865 NA non-coding upstream 87062 22631208 ~ 22631599 (-)
G133881 NA non-coding upstream 187411 22731557 ~ 22733108 (-)
G133903 NA non-coding upstream 261257 22805403 ~ 22809161 (-)
G133905 NA non-coding upstream 304617 22848763 ~ 22849361 (-)
LOC103040989 LOC108438207,LOC108276489 other downstream 3230274 19198350 ~ 19312044 (-)
G133109 NA other downstream 3553321 18969635 ~ 18988997 (-)
LOC111194101 NA other downstream 3564129 18976472 ~ 18978189 (-)
col24a1 col24a1,LOC107655744,LOC107709510,LOC107660294 other downstream 3899622 18444933 ~ 18642696 (-)
LOC103045666 LOC103045666,LOC108425511,LOC107707041,LOC106565412 other downstream 5045796 17482375 ~ 17496522 (-)
LOC103040235 fkbp1ab,fkbp1a,LOC108435222,LOC107707744,LOC105013763,LOC100705189,LOC101476936,LOC107657066,LOC103384692,LOC107747971 other upstream 295251 22839397 ~ 22847911 (-)
LOC103038244 NA other upstream 346500 22890646 ~ 22901632 (-)
LOC103034468 cdc42,LOC107083933,LOC103386293,LOC100697482,LOC107395067,LOC108435227 other upstream 365675 22909821 ~ 22916384 (-)
G134093 prim1,LOC107741309 other upstream 1080135 23624281 ~ 23631155 (-)
G134312 LOC108436342 other upstream 1728598 24272744 ~ 24273069 (-)

Expression


Co-expression Network