CI01000012_07548354_07550668 (VTI1B)


Basic Information

Item Value
gene id CI01000012_07548354_07550668
gene name VTI1B
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000012
NCBI id null
chromosome length 13770000
location 7548354 ~ 7551602 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000012_07548354_07550668.mRNA
ATGGAACAGGAGCTGTTTGGTGCTCCGTCATCCTTTCGAACCCCCATGTCAACAAAGATTCGACTGTACCGGCGAGATTTGGCAAAACTGCAGAGAGACATACGACTCTCAGCAACACCAGGGTTTTCAAGTCACCTTGGAGACAGCAGACAAGGGATATATGCTGCACAGAATGACCAGAGTACTCATCTTCAGTCCCAGCGTGCTTTGCTCATCCAGGGGACAGAGTCTCTAAATAATGCGTCAAAAAGTATCGAGCGAAGTCAACAGATTGCGGCAGAGACCGACCAGATTGGCACAGACATCATTGAGGAGCTTGGAGAACAGAGAGAACAACTGGACCGCACAAGAGACAGATTGGTTCACACTGGAGAGAACTTGAGCCGCAGCAGGAAAATCCTGCGCACAATGTCCAGACGACTGGTGACGAACAAACTCCTACTATCAGTCATTATCATCATGGAGCTGGCCATCTTAGGGGCGGTGGTTTACTTGAAGTTCTTTCGCAAGTAGGCAAAGAGACACACAAGGCTGTAAAAGACTCCACTTCTTCCTTTTCTTCTTCCTGATGTTCACTGGTGTCTGGCCCGGTGACAGTGTACTGGATGCTTTCGTGACTTTGAGTGTCACATGGACATGTATGGGCGGTTATTTTAAGCGCTAAACTGTATTAGCATAAGTAGTGCTCTCAGGGTGAAAAGAAGATGGTGACTATTGTGCATTCAGACTGCTGGAGGATCAGGACCTGTATAAAGACGAGAGATGGCCTTACTCCCTCCTTGGCTTATTCAGGGTGCCAAGGTGTAGATGTAGATGTATGGACAGATGAATGGTGTAAATGAAGCAACCAGTGAAAAGAGTGGAAAAAGAATATATATGCAATCTATCTGCATTTTTATACACATCAATCACTTTAAAGGGATAGTTCAATTTAAAAAATATATATAATTCTGTCATAATGTAATCACCCTCATTTTGTTCCAAACCTCATGTAAAAACAACATTGGACCCCATTGACTTTCATTGTATGGATAAAAAATGGTTGAAACATTCTTCAGAATACCTTCTTTTGTTTTTCATAAAAGAAATTAAGTCTTAAAGGTTTGGAATGCCATAGGACAGAATTTCTATTTTTGAGTGAACTCTCCCTCTAACTATTACTGAACTTTTAACTGTGATCAGAATTACATTGTGTATTAGACTTTTTTTGAGACAAGTGATAACAAGGCATTAAATGTAACAGCTCTCGTTCGTTCCTTAAATGGGTGTGTGTTTTCCTTTAGTTTTTCCACCAATCTGTGACAACAAAGCTGAGGGTACTCCAGGCCAAGAGAATGACAGCTATAAACATGCACGTCACTTGCTTCATAAGCCTTGGTTGGTGGAGAAAGGGGTGTGTTTAGCCTGTCAGATACGGGGGTAGACATTACTATAAACATGACTGAGA

Function

symbol description
vti1b Predicted to enable SNAP receptor activity and SNARE binding activity. Predicted to be involved in several processes, including Golgi vesicle transport; regulation of protein localization to plasma membrane; and retrograde transport, endosome to Golgi. Predicted to act upstream of or within intracellular protein transport and vesicle-mediated transport. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be part of SNARE complex. Predicted to be active in Golgi apparatus; cytoplasmic vesicle membrane; and endoplasmic reticulum membrane. Orthologous to human VTI1B (vesicle transport through interaction with t-SNAREs 1B).

GO:

id name namespace
GO:0005794 Golgi apparatus cellular_component

KEGG:

id description
K08493 VTI1; vesicle transport through interaction with t-SNAREs 1

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000012_07548354_07550668.mRNA True 1447 mRNA 0.42 4 7548354 7551602

Neighbor

gene id symbol gene type direction distance location
CI01000012_07509419_07535325 ZFYVE26 coding upstream 13029 7509419 ~ 7535325 (+)
CI01000012_07497278_07501713 PLEK2 coding upstream 46056 7497230 ~ 7502298 (+)
CI01000012_07480048_07492395 NA coding upstream 55588 7480048 ~ 7492766 (+)
CI01000012_07464278_07478699 FBLN5 coding upstream 69362 7464278 ~ 7478992 (+)
CI01000012_07441851_07459661 TRIP11 coding upstream 88568 7441851 ~ 7459786 (+)
CI01000012_07566408_07581870 RBM25, RBM25A, RBM25B coding downstream 14806 7566408 ~ 7581946 (+)
CI01000012_07584742_07586196 KCNF1B, KCNF1 coding downstream 33140 7584742 ~ 7586372 (+)
CI01000012_07645586_07647322 NA coding downstream 92078 7643680 ~ 7647962 (+)
CI01000012_07678377_07700760 ROCK2A, ROCK2 coding downstream 126775 7678377 ~ 7702194 (+)
CI01000012_07769675_07800004 PDSS2 coding downstream 217598 7769200 ~ 7800241 (+)
G73262 NA non-coding upstream 126465 7420693 ~ 7421889 (+)
G73162 NA non-coding upstream 148077 7395368 ~ 7400277 (+)
G73258 NA non-coding upstream 175540 7372589 ~ 7372814 (+)
G73257 NA non-coding upstream 175946 7372072 ~ 7372408 (+)
G73255 NA non-coding upstream 200452 7347650 ~ 7347902 (+)
G73175 NA non-coding downstream 156073 7707675 ~ 7715446 (+)
G73321 NA non-coding downstream 182694 7734296 ~ 7734698 (+)
G73346 NA non-coding downstream 250319 7801921 ~ 7802123 (+)
G73359 NA non-coding downstream 303741 7855343 ~ 7855654 (+)
G73363 NA non-coding downstream 317796 7869398 ~ 7869602 (+)
CI01000012_05923216_05928055 SRD5A2B other upstream 1624049 5922385 ~ 5929186 (+)
G71623 NA other upstream 1731749 5813517 ~ 5816605 (+)
G71548 NA other upstream 1986921 5550493 ~ 5561433 (+)
G71221 NA other upstream 2007898 5538525 ~ 5540456 (+)
G71218 NA other upstream 2009970 5535852 ~ 5538384 (+)
CI01000012_07806089_07811902 BEND3 other downstream 254501 7805248 ~ 7811902 (+)
G73578 NA other downstream 815204 8366806 ~ 8367627 (+)
CI01000012_10223957_10235955 NA other downstream 2670353 10223697 ~ 10236276 (+)
G75533 NA other downstream 3593215 11144817 ~ 11145739 (+)
G76385 NA other downstream 5079153 12630755 ~ 12675666 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location