G157052


Basic Information

Item Value
gene id G157052
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035914.1
NCBI id CM008317.1
chromosome length 41377133
location 8566429 ~ 8567668 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU212945
CAAATATGGCTGAACCTACCCCAAAAAGAAGACTGACTGAGGATGACCCCGACCCAAATACTGGGTCTACGAACGTAAATTGGCCAAAGTTTATATTGTTGGAATCCACATCAACTGAAACACCTTTAAGTAAGCTCTCCCCTTTTGCAATACACAAGGGTATATTGGGTATCGCAGGGACGGTAAAAGATGTTAAGAAACTCAGATCTGGTCAGATACTGGTGGAGTGTaccagaaaaatacaagcagACAACCTTCTTGGTATTAAAACATTTGTAGGTGTCAGCATTAAGACCTTCCCCACCCAGTGCTAAACAGCTGCAAAGGCGTTATCCGATGTAGAGAGCTGGATGATATATCTGAAGAAGAAATTGTCACAGAACTAGCTCCTCAAGGTGTAACCCATGCCAAACGTATAACAATTAGAAAACAAGATAAgaccataaaaacaaatacatatattctTACGTTTGATAAACCAACCCTCCCAGATAAGATCTCAGTGGGATACCTTAAAGTAAATGTAGAGTTGTATATTCCCAACCCTATACGATGTTACAAATGTCAGAAATATGGACATGGATCAGTCGTCTGCAAGAGCCCCGCAATCTGTCACAATTGGCTGACCAGTGACAAACCACAACTGGTCACCAATCCAAAAGAACCCACTCCTCCTAAAGTAAAAAGTTCATATTCCCAAAGTCCGCCCATGACTGCCCAGACACTACCACATCataaacaaaaccaaaatatTGCAAGTCATAGTGGGGGCATAACAGGAAAAAAGTTGGAACACTCACGACAACAACCAAAAGCAAGTACAGACCTCAACACTGGACAATCTGAACAATTAAAAGATATCGAAATGGAAGAAGGTGCGTCGTCCCGAAGCCGGAGCGCATCACCTAAAGGAAGAAGCAGATCGCACATACGGTCGTCACGAACAAAATGACATCAAATCCTATTATACAATGGAACTGTCGAGGATTTAGAGCCAACCATGCTGAACTCCAACATCTAATAGCATCCCTCAACCCTGTTGTTACATGCCTTCAAGAAACCCATTTAGCACCAGGTACTAAGACATCACTGAAGGGCTTTGTTACCTACAGCAACTATGGACCGAATGTACACAGGCCATCCGGAGGGACCTCCATTCTGGTGAGACACAACATCCCACACAGCCAATTCATCACTTAATACACGACTACAAGTGACAGCAGTACAAGTATCTAATATC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU212945 True 1240 lncRNA 0.43 1 8566429 8567668

Neighbor

gene id symbol gene type direction distance location
prpf18 prpf18,LOC107671164,LOC107719961 coding upstream 931 8555188 ~ 8565498 (+)
cpt1b cpt1b,LOC100329197,LOC107599889,LOC107671150,LOC107686536 coding upstream 33262 8520018 ~ 8533167 (+)
LOC103026556 LOC108264446 coding upstream 52998 8508404 ~ 8513431 (+)
chkb chkb,LOC107577700 coding upstream 58934 8494840 ~ 8507495 (+)
pgc LOC108440932,LOC108441008 coding upstream 91958 8466873 ~ 8474471 (+)
LOC111194761 NA coding downstream 252434 8820102 ~ 8826458 (+)
LOC103043520 NA coding downstream 263761 8831429 ~ 8836613 (+)
LOC103030146 impdh1,impdh1a,LOC108442450,LOC107559456,LOC107665545,LOC107710381,LOC107599814,LOC106561215,LOC103030146 coding downstream 277308 8844976 ~ 8871398 (+)
LOC103031618 NA coding downstream 329909 8897577 ~ 8902959 (+)
rbm28 NA coding downstream 337067 8904735 ~ 8919978 (+)
G157027 NA non-coding upstream 128160 8432614 ~ 8438269 (+)
G157022 NA non-coding upstream 204679 8361520 ~ 8361750 (+)
G157019 NA non-coding upstream 209352 8356218 ~ 8357077 (+)
G156917 NA non-coding upstream 705789 7846615 ~ 7860640 (+)
LOC107197493 NA non-coding upstream 716551 7846483 ~ 7849878 (+)
G157054 NA non-coding downstream 576 8568244 ~ 8568463 (+)
G157064 frmd4a non-coding downstream 35921 8603589 ~ 8608021 (+)
G157069 NA non-coding downstream 113141 8680809 ~ 8683103 (+)
G157210 NA non-coding downstream 324422 8892090 ~ 8894941 (+)
G157224 NA non-coding downstream 381157 8948825 ~ 8949097 (+)
G156840 cd9a,LOC108438826,LOC107686554,LOC107733276,LOC107559685 other upstream 959761 7600567 ~ 7606668 (+)
LOC111194759 NA other upstream 1134861 7372376 ~ 7431568 (+)
ptprq ptprq,LOC108413201,LOC107705767,LOC107686600,LOC107564908 other upstream 1394804 7093507 ~ 7171625 (+)
G156188 NA other upstream 3409029 5157154 ~ 5157400 (+)
LOC103030011 LOC108433937,LOC108264032,LOC106573278,LOC106561481 other upstream 3929139 4575668 ~ 4637290 (+)
G157055 NA other downstream 2262 8569930 ~ 8570877 (+)
G157383 NA other downstream 1373161 9940829 ~ 9941805 (+)
gan gan,LOC107738389,LOC107684660,LOC107722487,LOC107666225 other downstream 2005075 10572743 ~ 10591523 (+)
klhl36 klhl36,LOC107684687,LOC107722460,LOC107666227 other downstream 2133120 10700788 ~ 10713982 (+)
LOC103038570 cs012,zgc:112052,LOC103038570,LOC107666220,LOC108424746,LOC107587048,LOC107683025,LOC103371715 other downstream 2184031 10751699 ~ 10754698 (+)

Expression


Co-expression Network