LOC107197493


Basic Information

Item Value
gene id LOC107197493
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035914.1
NCBI id CM008317.1
chromosome length 41377133
location 7846483 ~ 7849878 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XR_001518589.2
AAAGAATCACGTTTCGTTTTCCTTTCTGCAGAAAGTCGACTACCCCAGACAGACGGTTTTGTCTGTGTGGAATGTGGGCAGGTTGTAGTGTTAAAGTTTAAAAGGAAGAGACAGTTTGCACTGTGCTTCATTTTGAGCTTTCTCACTCAACAGCCTGCCCTGGGTCTTAATCTCGACTCTCTGCTGGAACCCAAGACAAAGGGGATCTGAAACTTAGCGAGAACACCACAACAGTAATGACAGGAGAGGATAgcgatggtgatgatgatgaagatgatgacaGCGGAAAAGGCGGGAGATAGACCGGTTGCCAAGGACTGGGCTGTGGAGTGGGACTTAAACCAATAGACGAGTACATGCTGTTGGTATTTTGCCATACATGTGCTAATTGAGCTGTgattctttgaaaaaaaaaggctttcctTTGCCTTTCAAAGAAAACACTCTCATCCTCTTGCCGAGCCTTGCCGAGCGCTTCCTGCCTCTGCCTGCCTGAAGTATTACGAGTAGTAATACAACATGTACCAATGTACCAATGAGATGGGCTTGTATATTCTCCACAGATTAATTACTGGACACTTCTCACCAGATTTCTtcatattttcaattttttccaCCACAGGACTTCAACATCTGTAACTGAACTActatacatacttttttttaaatatagacgCATATTATTGGGGAAAATAGACAAGCCTAAGACTACATAAGTCTACCTACTTATGTAGCAACATTTTACTAGGACAATAAAGATCCTTTACTTGTACATAgtacacataacacacacacacaaacacacacacacacacacaatcacatcaCACACTATCACAAATATGCACACGTGTGCTAAAACATTTTAccatacacaaaaaaatggaaaaagctcAAAGATGACGTCATTCATGGTTCTGCCTGCAGTAAAATGGTTTGATGACTGCATGGCGTAAAATAATTCGATTGAATTAAAGCTAAAGCAAAGATGTCTAAAAACACTTCAGGGATGAAATAAAACAGATATagtcattatatatattataaaaccaAAACCTTTTGTGCAAAATGTACATATCAGGAAGATGTGCAGGATAATTCTATGCAACTGAGCAGAAGATAGAATTTGATTATGATAATTTGATTATTAAGGTATTAGGGTTAAGGGAATAAAAgtttgtgtgatgtgtgtgtgtgtgtgaatagagGGGTAGTCCTGCTTTTTcaagctcctcctcctcttctctgtGTTGCTGTCAGGGTAAGAATGCACTTCCCTGACcgcagcataaaaaaaactatagctGGAACGGCTGAGCTACTTGGGATGGCTGAGGCTGTAGCCAGTGAGATGGGCTTGTGTATTCTCCACAGATAAATTTagaatgtatttataaaaaaacgtTGCATAGCCTAACTGACATTAAATAGTATCGActtaagaaaacttaagaaatcaccttagagaaaaaaaa

Function

GO: NA

KEGG:

id description
ko04371 Apelin signaling pathway

RNA

RNA id representative length rna type GC content exon number start site end site
XR_001518589.2 True 1475 lncRNA 0.39 2 7846483 7849878

Neighbor

gene id symbol gene type direction distance location
LOC103033491 arf5,zgc:77650,LOC103033491,LOC108439765,LOC108439842,LOC107599983,LOC107599973,LOC105912562 coding upstream 10757 7830102 ~ 7835726 (+)
LOC107197496 arf5,zgc:77650,LOC105912562,LOC108439765,LOC108439842,LOC107599983,LOC103033491,LOC107599973 coding upstream 17921 7824010 ~ 7828562 (+)
LOC103034665 LOC108439498 coding upstream 48474 7783636 ~ 7798009 (+)
terb1 NA coding upstream 76180 7755742 ~ 7770303 (+)
LOC103030643 LOC103030643 coding upstream 119533 7720499 ~ 7726950 (+)
LOC103032733 LOC108439982 coding downstream 2047 7851925 ~ 7860510 (+)
odf3b NA coding downstream 12194 7862072 ~ 7866578 (+)
rabl2b rabl2b,rabl2,rabl2a,LOC107662875,LOC107600941 coding downstream 25146 7875024 ~ 7880960 (+)
LOC103028908 NA coding downstream 441284 8291162 ~ 8301780 (+)
arsa arsa,LOC100304877,LOC102794702 coding downstream 573788 8423666 ~ 8432053 (+)
LOC107197499 NA non-coding upstream 1660 7841657 ~ 7844823 (+)
LOC107197497 NA non-coding upstream 6850 7838726 ~ 7839633 (+)
G156856 pdp2,LOC108423909 non-coding upstream 90819 7752203 ~ 7755664 (+)
G156824 utp15,LOC107559694,LOC107686557,LOC107662854 non-coding upstream 287526 7553653 ~ 7558957 (+)
G156731 LOC108437702,LOC108264175 non-coding upstream 433795 7351997 ~ 7412688 (+)
G157019 NA non-coding downstream 506340 8356218 ~ 8357077 (+)
G157022 NA non-coding downstream 511642 8361520 ~ 8361750 (+)
G157027 NA non-coding downstream 582736 8432614 ~ 8438269 (+)
G157052 NA non-coding downstream 716551 8566429 ~ 8567668 (+)
G157054 NA non-coding downstream 718366 8568244 ~ 8568463 (+)
G156840 cd9a,LOC108438826,LOC107686554,LOC107733276,LOC107559685 other upstream 239815 7600567 ~ 7606668 (+)
LOC111194759 NA other upstream 414915 7372376 ~ 7431568 (+)
ptprq ptprq,LOC108413201,LOC107705767,LOC107686600,LOC107564908 other upstream 674858 7093507 ~ 7171625 (+)
G156188 NA other upstream 2689083 5157154 ~ 5157400 (+)
LOC103030011 LOC108433937,LOC108264032,LOC106573278,LOC106561481 other upstream 3209193 4575668 ~ 4637290 (+)
G157055 NA other downstream 720052 8569930 ~ 8570877 (+)
G157383 NA other downstream 2090951 9940829 ~ 9941805 (+)
gan gan,LOC107738389,LOC107684660,LOC107722487,LOC107666225 other downstream 2722865 10572743 ~ 10591523 (+)
klhl36 klhl36,LOC107684687,LOC107722460,LOC107666227 other downstream 2850910 10700788 ~ 10713982 (+)
LOC103038570 cs012,zgc:112052,LOC103038570,LOC107666220,LOC108424746,LOC107587048,LOC107683025,LOC103371715 other downstream 2901821 10751699 ~ 10754698 (+)

Expression


Co-expression Network