LOC103028908


Basic Information

Item Value
gene id LOC103028908
gene name NA
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035914.1
NCBI id CM008317.1
chromosome length 41377133
location 8291162 ~ 8301780 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022679551.1
CCAGCTCATTTAACCTGTGCTCATCCAGACTTCACCTCTTTAACCTGCCTCTGAGGATTCTGAGGAAATCTTAGTTTTTCCTTCACCAACAATCAGAACCACCAGAACCATCCAGAACAGCCGATCCAGGATAATGAAATGGCGCAGAAATTAGATCTCACTGAGAAGGAACTTTCCTGTCATCTCTGCTGCCATATCTACGAGGATCCTGTGCTGCTGCCTTGTCATCACAGCTTCTGTCAAGAATGCCTGCAGGAGTACCGGGAAAGCAAGAAAACGCTCAAATGCCCCGTGTGCAAGAAACCAGCTCCCAAAGGTTTACCTCCAGCTAACCTGCAACTGCAGGCAATGTGTGACAGATTCCGTCAGGAGAGAAGGAGATCAGCAGAGAGGCACGAGACTCTCTGTGACCTGCACAAGGAGAAACTCAAGCTCTTCTGCCTGGAGGATAAGGAGCCGGTTTGCGTCGTGTGCAAGGAGATGAAACTGCACAGCACACACAACTTCAGACCACTGGATGAAGCAGCAACGGAATACAGGGTGATGCTCCGCTCTAAACTGAAGCCCTTGCAGGAGAagcttaattcatttttaaaagctaAACTGATTTGTGATCAGACGGCGCAGCACATTaagAGCCAGGCCCAGCAAACAGAGAGACACATTAAAGAAGAGTTCCAGAAACTTCACCAGTTTCTacgagaagaagaaaaagacagtttgtctgcactgaaggaggaggaggaggtgaaaAGCCAAAAGACACGGAACACCATCAGTAGAATAAACGACCAAATCCTCCACCTGTCCCAAATAATCACATCTACATATGAAGAATTATCATCTGAGGACACAGCTTTTCTTCAGAAATACAAAGAAATTGATGACAGAACTGACTATGATGTACAAGATCCAGAGATCCTGTCTGAAGTTCTGATTGATACGGCAAAGCACCTGGGCAATCTGAAGTTCAGAGTATGGGAGAAGATGAAGGATATGATCACTTACACTCCTGTGATCTTAGACTCCAACACTGCCCACCGGCGTCTCGCCCTCTCCAATGACCTCACCAGCTTTGTGTGTCAAGATGAGCACAGACAGATTCCCGAAAACCCAGAGAGGTTTGACCATCATCTGTGGGTCCTCGGCTCTGAGGGCTTCAGCTCAGGATCACACTACTGGGATGTTGAGGTGGAAAACTGTAAAGAGTGGGCTCTGGGGGTTGTAACGGGTGCTATGCAGAAGGGTAAGACATTCTTCAGTGGGATATGGAAATGCCATTACGAGAACATTTTGTATGGGGCTAGTTCCACTGGAGGACCCACCGACATCCTCAAAGTGAGGGGGAGCTTACGGAAGATCAGAGTGCAGCTGGACTGGGATGAAGGAAAAGTCTTGTTTTATAACCTCAACAATGGACGACCTTTACAGACTTTTTCACACAAGTTTACAGCACCGGTCTTCCCTTACTTCTGTAACCAGTGTAAAACGTATCCACTGAGGATTTTGCCAAAGGAGATCTCTATAGCTGTACCACAGGAGTGTAGCGCACATGAACTAGCTTTTCTGGCTACATACTCTACTGCTTAGACTTACAGGTCTATGCCTACTTCAATTCCGTGTGGATTCCCTAAACTTTGAAAAGGTTATCGTATTTAcataaatttgtattttaaaggaCCAATGTGTAATTATATTTGCTGTACTAACTCTTTTCTTTAACTATGtgtttctactgtccagggaaaaGCTTTCTACTAGGTTTTTGCATTAgtgcattagtgaggtcaggatttgGATCATTACCAACCCACCCAATCATCCCCAGTCTTCTAACTCATCAAAAAAGTCAGATAGAGTGCCAGCATGATAGTGCCAGAGAATGCAGCTCAATTCCTTTGTAACCCCTCAAAACCCATGTTTGGCTCTAGGCTTGGTTCCAATAGGTGCAATGTTGtctgtttatctgctctagaAAGTCTTAGGGCCCTTTTGTGCACTATGCCCAAGGCACgctgcgatgctcattgctatcttacaccccgtcaacagtctaatTTCACGCCTTTCATccgcaccattaaaatagcttcAGAGTTTAGGACTATATTTACGCCAaagggtgtggtggtctggaagcgaggtgtgttcaggtaaatatctggcgtgtttctatcttatCGGCGGGAAATACCGGTGCGCCactaactgattaaaaccctgacaacaatcaaCAGTCAGCCGTGCAAAAGCACCACTGCTAAGCAATCAATGTGCCAAACCCAAAGTAcaactggctcttaaaggtaatgacaagtggcacactgattggtttatttcaaatTTCAAGCTCAAAATATTCCCATGATTAttgagagaattagtacatgccttttgcatgtttcgagcCGTGCAAGGTGTAAGACACACCAAcgcatgccctaaatcaagctgcgtgaTGCACAATTGACCGGTGCAGTATAGATCACATAAATAAGGCCCTTAGTGTTTTAGTGAATGCATATGTgcgtgcatttgcacatctgagACAGCCATAGGGGCTCCTTAAAGTAGGTAAATGCATTTGTAACAACTGATCTCTCCACACATTTGTACAGTATAGCGTATAGTGTATATTAAGAGAGCTAGGCCTCGTGGCTGATAGCAGATTTGCCAGGTTTGTGCCTCTTGAACACAACAAAATAGTATAACAACATTGAACTCAAGAACTGACAATTCTTACATAAAAAACTACAATAATCTTGTTactatgctaaaaaaaattaggctatactatgctatacaaATCAGTGCCTCTTAGTAAACTGGCCAATCAGAGCAAGCTTATTAAATgattcacttttatttattcaccATAACAGgaaaataacagggttgtacTGTAAATTGGAGGGTAAAATgacatttgaacatttttacACCACACCAAAGCCACAAACGTACTATTAATATGTCATATAGAAGTTTAAAATgctgaataaatatattctatGGTATATTTAAAAGTGAGAATCAGATATTACTCACACTACACATTACGGTAGCTGTGATGGTGgctggcatttaaaaaaaaaacagttatttacagttatttatttcattcatgAGCTGTCGTCATGTGTCAGGAACGGTATATTAACACTGAGCACTGTATGGCATTTTCTGTCAGTGAATGACATTAAACGTGTGGCATTTACCTGCCGTTCTGCCTTTTGTAACGCTGCTGCTTTGTGTTTACTATATTCCATTTTATTTCAGAGTAAAATACATGTTAGACATGGAAGTAAAAAGCTTTCACAATTCTATTTCCACTATATTTTTGAACATACAGGTTTAGTCACTATATCAGGCATGTTTCTTGCATTGTCGAGCTCTAATACTGTCACATCACAGCAACAAAGCAGCTTGTCAGGTACGGTACTGAAGACCTGAATAAaatgacagcagcagcagcactgtagAGCCTGATGAAAAGGATACTCATATCGATCTCCATTCAGAcggagagattgagagagagactaGGAATACCACATGGGGATCAGCATCAGGCCAGATAGACTTTCCAGATGCAGTCagtttctttttattcattCTGTCACTCAGTCATGCTTTTTCTCTCACTACAGTAGCCATTATTACAATATACAGCTGTTGTAGCATGAATAATAACAGTGTAGTTAACAGGTTATTAATTATCTATTGAATAATAGAGGGATTAAAAGactttttttgcagaaatttatgtatgtatgtgcagaaaatgtgcTGAAACTGGAAATGTAATCAGTGTGCATGCCAATTTTCTTCCATTTAGTGGAATGTTAAAAGGATTACCCACTTTGTTCATGCCGGTACAAATTATATTCAGATTCGTAGTAcacataaacatgttttattctgatttagcTATTAGTCAGATTATTTACAGATTATTAGACTGCATGTAAACATGGATACTGATGTTTGCTTATGGAAGCTGATCGATCAAGAATATGGGTGCAGTGGACACTTTTAGGTACTGGTTGATTGGAAATCTTGTAGACATTGAAGGTTCTCCACACTCACAGATCTCAG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022679551.1 True 4098 mRNA 0.41 6 8291162 8301780

Neighbor

gene id symbol gene type direction distance location
rabl2b rabl2b,rabl2,rabl2a,LOC107662875,LOC107600941 coding upstream 410202 7875024 ~ 7880960 (+)
odf3b NA coding upstream 424584 7862072 ~ 7866578 (+)
LOC103032733 LOC108439982 coding upstream 430652 7851925 ~ 7860510 (+)
LOC103033491 arf5,zgc:77650,LOC103033491,LOC108439765,LOC108439842,LOC107599983,LOC107599973,LOC105912562 coding upstream 455436 7830102 ~ 7835726 (+)
LOC107197496 arf5,zgc:77650,LOC105912562,LOC108439765,LOC108439842,LOC107599983,LOC103033491,LOC107599973 coding upstream 462600 7824010 ~ 7828562 (+)
arsa arsa,LOC100304877,LOC102794702 coding downstream 121886 8423666 ~ 8432053 (+)
pgc LOC108440932,LOC108441008 coding downstream 165093 8466873 ~ 8474471 (+)
chkb chkb,LOC107577700 coding downstream 193060 8494840 ~ 8507495 (+)
LOC103026556 LOC108264446 coding downstream 206624 8508404 ~ 8513431 (+)
cpt1b cpt1b,LOC100329197,LOC107599889,LOC107671150,LOC107686536 coding downstream 218238 8520018 ~ 8533167 (+)
G156916 NA non-coding upstream 353132 7836755 ~ 7938030 (+)
G156917 NA non-coding upstream 430522 7846615 ~ 7860640 (+)
LOC107197493 NA non-coding upstream 441284 7846483 ~ 7849878 (+)
LOC107197499 NA non-coding upstream 446339 7841657 ~ 7844823 (+)
LOC107197497 NA non-coding upstream 451529 7838726 ~ 7839633 (+)
G157019 NA non-coding downstream 54438 8356218 ~ 8357077 (+)
G157022 NA non-coding downstream 59740 8361520 ~ 8361750 (+)
G157027 NA non-coding downstream 130834 8432614 ~ 8438269 (+)
G157052 NA non-coding downstream 264649 8566429 ~ 8567668 (+)
G157054 NA non-coding downstream 266464 8568244 ~ 8568463 (+)
G156840 cd9a,LOC108438826,LOC107686554,LOC107733276,LOC107559685 other upstream 684494 7600567 ~ 7606668 (+)
LOC111194759 NA other upstream 859594 7372376 ~ 7431568 (+)
ptprq ptprq,LOC108413201,LOC107705767,LOC107686600,LOC107564908 other upstream 1119537 7093507 ~ 7171625 (+)
G156188 NA other upstream 3133762 5157154 ~ 5157400 (+)
LOC103030011 LOC108433937,LOC108264032,LOC106573278,LOC106561481 other upstream 3653872 4575668 ~ 4637290 (+)
G157055 NA other downstream 268150 8569930 ~ 8570877 (+)
G157383 NA other downstream 1639049 9940829 ~ 9941805 (+)
gan gan,LOC107738389,LOC107684660,LOC107722487,LOC107666225 other downstream 2270963 10572743 ~ 10591523 (+)
klhl36 klhl36,LOC107684687,LOC107722460,LOC107666227 other downstream 2399008 10700788 ~ 10713982 (+)
LOC103038570 cs012,zgc:112052,LOC103038570,LOC107666220,LOC108424746,LOC107587048,LOC107683025,LOC103371715 other downstream 2449919 10751699 ~ 10754698 (+)

Expression


Co-expression Network