G157920 (zgc:173742,LOC108415671,LOC107684664,LOC107553995,LOC107749320,LOC108264272)


Basic Information

Item Value
gene id G157920
gene name zgc:173742,LOC108415671,LOC107684664,LOC107553995,LOC107749320,LOC108264272
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035914.1
NCBI id CM008317.1
chromosome length 41377133
location 12741848 ~ 12758089 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU214098
ATGCGTTTATTGAAATCTTTCATAGAAAAGTAGAGACTtgatatatatgtgtaaaaaaacagttaaagtgCCAAcagcatttataaaacatttatagttGCAACTGCAAGTCAAcaacttgattttaaaatttgCTTATAAAAGAACTTAAATTCAAAGTCTATTTTCAACTACATAGAAGTGATGTGAGGGGGTCAGAACTGAAAGTCCATTTCAGTCATATCGATGGCCCAAGCAAATTTATCTCTCAGGGACTTGTTGTAGATTTTATCCAGTGGCACCTCCAAGTTCTTACACcaggCCACGCTAATGCGTGGGTCCAAGTAGTTTAGCTTGGAGGTGCTCAGGGCGATCTGCTTGTTCTCTTCTCTGTCTGTTGCCTGAACCTCCATcttcagcagctgctcctcACAGCGCTGCActgctttcttcttcttttctaccAGAACAAGTAGCTTGTTGTCAGAGCTCTCTTTAGCTTCTTTCTTTGCCTGTTTCAGCTCTTTTTTGGCTAGCACTAGCTGCTCTTTCCTGCTGTCGATCTTAGCCTGCAGGTTTGCCATAGACTGCTCAAAGGTTTTTGGTGGCGCCCGCTGATGGTTACAGAGAACTGCAACCGCACGGTTTGCCCGGTTGTAGGAGAGCAACTTCTCAGGCACATTGTCTGATGGGTTGCTGAGCtctttgagctgctgctgcagtgtgaTGGAGGCGTTATATGTCCTAAAAACCTTGGCAGTCAGACCAGGCATGAGAGAACTCAGATGTTTATTCAATGTTGCTGTATTCAGTCGATCAAACAGGTCATCCCCCTCCTGcttgttttccatgaaaagctTGAGATTTTTAAAAACCCTTTTAGAGACAGGAACCTTGTTGTAGTACCGGATGCAATCTTTACCCAGGAAGTCGAACTCCACCACACACTTCTCTCCGTCGATCGTGTCGTGTAAAGTGATGTGTTCCACTCGCAGAGAGCAGCAACCCACTGTATCGGCTGTTTCTCCTTCTTCCTTTTCATTACCTGCTCTCAGAGCCAGCTTGTCAATGAAGTAAAGCGCCACGGCTCTCTGGCGAGTGCCCATCTGTTTAGACTTCAGGTCTTCCTGGTACTGGGATCGGATGGCATCCACACAGGTTTTGAGTTTGCGAGCCACTTCATACTTCTCCCAGTCTTTCTCCCCCTGCACACCGTGAAACATGCCAGCTTATGTCAGACACAAGCGGAAGTTCAGTTTCAGACAGCATCTGCATGCTT

Function

symbol description
zgc:173742 Predicted to enable DNA topoisomerase type I (single strand cut, ATP-independent) activity. Predicted to be involved in DNA replication; chromosome organization; and chromosome segregation. Predicted to be located in chromosome. Predicted to be active in nucleolus.

NR:

description
DNA topoisomerase I, mitochondrial isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU214098 True 1258 lncRNA 0.45 8 12741848 12758089

Neighbor

gene id symbol gene type direction distance location
utp4 utp4 coding upstream 217736 12515462 ~ 12524112 (+)
LOC103032257 tspan9a,LOC108414266,LOC105018129,LOC107672591,LOC107738414,LOC107587031,LOC107559293,LOC106573177 coding upstream 407933 12031136 ~ 12333915 (+)
LOC103046882 zgc:110789,LOC108413851,LOC107673135,LOC107738439,LOC107722464,LOC107670368,LOC108264853,LOC107587050 coding upstream 1280203 11450922 ~ 11461645 (+)
nup205 nup205,LOC107684652 coding upstream 1448175 11269015 ~ 11293673 (+)
fam107b fam107b,LOC107722469,LOC107738407,LOC102787157 coding upstream 1475528 11231961 ~ 11266320 (+)
mlycd mlycd,LOC107583902,LOC107722462 coding downstream 25710 12783799 ~ 12800375 (+)
vps9d1 vps9d1 coding downstream 860599 13618688 ~ 13647775 (+)
spata2l NA coding downstream 901841 13659930 ~ 13664333 (+)
uri1 uri1 coding downstream 908596 13666685 ~ 13675380 (+)
cry1 cry1,cry1ab,LOC107672239,LOC108426403,LOC103023024 coding downstream 1202966 13961055 ~ 13972324 (+)
G157905 NA non-coding upstream 80740 12655809 ~ 12661108 (+)
G157903 NA non-coding upstream 91664 12647988 ~ 12650184 (+)
G157795 NA non-coding upstream 308552 12325867 ~ 12433296 (+)
G157926 NA non-coding downstream 104300 12862389 ~ 12862656 (+)
G157933 cdh13,LOC107684661,LOC107722459 non-coding downstream 216399 12974488 ~ 12982471 (+)
G157943 NA non-coding downstream 517371 13275460 ~ 13345464 (+)
G158023 NA non-coding downstream 1090553 13848642 ~ 13849299 (+)
G158045 mterf2 non-coding downstream 1225857 13983946 ~ 13987158 (+)
hsbp1 hsbp1,hsbp1b,LOC107583924,LOC107553992,LOC107670150,LOC107749299 other upstream 846 12735519 ~ 12741002 (+)
LOC103031933 ttc38,LOC103031933,LOC108414465,LOC104940279,LOC106573176,LOC100694777,LOC107722483,LOC107673144 other upstream 375078 12340006 ~ 12366770 (+)
hipk2 hipk2,LOC107722467 other upstream 1598377 11031065 ~ 11143471 (+)
LOC103038570 cs012,zgc:112052,LOC103038570,LOC107666220,LOC108424746,LOC107587048,LOC107683025,LOC103371715 other upstream 1987150 10751699 ~ 10754698 (+)
klhl36 klhl36,LOC107684687,LOC107722460,LOC107666227 other upstream 2027866 10700788 ~ 10713982 (+)
LOC107197649 LOC108416831 other downstream 975856 13733945 ~ 13742500 (+)
LOC103042073 LOC103042073,LOC108418727 other downstream 1215732 13973821 ~ 13980025 (+)
G158369 NA other downstream 2292133 15050222 ~ 15050718 (+)
LOC111194769 NA other downstream 2370279 15128368 ~ 15137270 (+)
c18h11orf16 NA other downstream 2548123 15306212 ~ 15315552 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) G82050 NA non-coding CI01000013 null 7348719 ~ 7352640 (+)
eurasian perch (Perca fluviatilis) G69708 NA non-coding NC_053118.1 CM020915.1 1026535 ~ 1026961 (+)
bowfin (Amia calva) AMCG00020645 zgc:173742,LOC107684664,LOC107749320,LOC107553995,LOC108415671 coding CM030127.1 CM030127.1 27421048 ~ 27425477 (-)
tiger barb (Puntius tetrazona) G63073 NA non-coding NC_056706.1 CM032075.1 11538012 ~ 11538299 (-)